View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13421_high_10 (Length: 341)
Name: NF13421_high_10
Description: NF13421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13421_high_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 25526174 - 25526476
Alignment:
| Q |
19 |
caaccttcataaatgcatcaatttctggacttggcatcaccnnnnnnnccttttctaagctttccagatttttcaataactctgattaagaaattaaatg |
118 |
Q |
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| T |
25526174 |
caaccttcataaatgcatcaatttctggacttggcatcacctttttttccttttctaagctttccagatttttcaataactctgattaagaaattaaatg |
25526273 |
T |
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| Q |
119 |
atttaatttagttcagaaatttgatttagattaaaaatgaatataataaaggtaatattataatgtacctgcatcatttgaaccttgacatctatttgca |
218 |
Q |
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| T |
25526274 |
atttaatttagttcagaaatttgatttagattaaaaatgaatataataaaggtaatattataatgtacctgcatcatttgaaccttgacatctatttgca |
25526373 |
T |
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| Q |
219 |
aaatcaaaagtttctctcactgttagttctcctatgtgatcatcaatttggctaatgtatgctgaagccctttgaatacaaaactgcttttgctcatgtc |
318 |
Q |
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| T |
25526374 |
aaatcaaaagtttctctcactgttagttctcctatgtgatcatcaatttggctaatgtatgctgaagccctttgaatacaaaactgcttttgctcatggc |
25526473 |
T |
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| Q |
319 |
cat |
321 |
Q |
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| T |
25526474 |
cat |
25526476 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 341
Target Start/End: Complemental strand, 40098105 - 40098073
Alignment:
| Q |
309 |
tgctcatgtccatcaacaaaagggaagcagtgc |
341 |
Q |
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| T |
40098105 |
tgctcatgcccatcaacaaaagggaagcagtgc |
40098073 |
T |
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