View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13421_high_5 (Length: 374)
Name: NF13421_high_5
Description: NF13421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13421_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 361
Target Start/End: Complemental strand, 37027432 - 37027072
Alignment:
| Q |
1 |
tgttgaatctaaggatgcaagctcttgactccattggaattggattaacactaatgcacaaaattagaggttgaaatttgaaaatatcctcacagatttt |
100 |
Q |
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| T |
37027432 |
tgttgaatctaaggatgtaagctcttgactccattggaattggattaacactaatgcacaaaattagaggttgaaatttgaaaatatcctcacagatttt |
37027333 |
T |
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| Q |
101 |
gctgatggagagtaagagaaatggactgtaatataaatagttagttggtagccgtaaagtgagaaagcatgaatatataaactaaagctgattctgctgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37027332 |
gctgatggagagtaagagaaatggactgtaatataaatagttagttggtagccgtaaagtgagaaagcatgaatatataaactaaagttgattctgctgt |
37027233 |
T |
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| Q |
201 |
cgctttaatttgttgctgtcactttgtgatatgttaattataagctaacaatttgctaaaaggataaaggttaagtggtgcattgcatttctttggaatt |
300 |
Q |
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| T |
37027232 |
cgctttaatttgttgctgtcactttgtgatatgttaattataagctaacaattttctaaaaggataaaggttaagtggtgcattgcatttctttggaatt |
37027133 |
T |
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| Q |
301 |
tggatactattagtacgtataaaatagagttcatcaattattttgtgaggaatatattctt |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37027132 |
tggatactattagtacgtataaaatagagttcatcaattattttgtgaggaatatattctt |
37027072 |
T |
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