View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13421_high_6 (Length: 373)
Name: NF13421_high_6
Description: NF13421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13421_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 59 - 241
Target Start/End: Complemental strand, 34385637 - 34385455
Alignment:
| Q |
59 |
gattaagatgttcaacttactataagctgcctgctgctatattccagagattgacatttagttatggagtattttattggcggcatatatacaataagac |
158 |
Q |
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| T |
34385637 |
gattaagatgttcaacttactataagctgcctgctgctatattccagagattgacatttagttatggagtattttatcggcggcatatatacaataagac |
34385538 |
T |
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| Q |
159 |
tgccaatctaatgcnnnnnnnnnttattaaaacttcattcactgaatataacgcacaagtctatgtacattcagggcacaaga |
241 |
Q |
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| T |
34385537 |
ggccaatctaatgcaaaaaaaaattattaaaacttcattcactgaatataacgcacaagtctatgtacattcagggcacaaga |
34385455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 237 - 355
Target Start/End: Complemental strand, 34385429 - 34385311
Alignment:
| Q |
237 |
caagaatggtataaaacaactagaggtctgttattggctccttcggggctcttgtatgtaaggagttttcactaacattaatatctttgaatggaacctg |
336 |
Q |
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| T |
34385429 |
caagaatggtattaaacaactagaggtctgttattggctccttcggggctcttgtatgtaaggagttttcactaacattaatatctttgaatggaacctg |
34385330 |
T |
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| Q |
337 |
tatagaaactatggaaaca |
355 |
Q |
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| T |
34385329 |
tatagaaactatggaaaca |
34385311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 86 - 159
Target Start/End: Original strand, 9879169 - 9879242
Alignment:
| Q |
86 |
tgcctgctgctatattccagagattgacatttagttatggagtattttattggcggcatatatacaataagact |
159 |
Q |
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| T |
9879169 |
tgcctgctattatattttagagattgacatttagttgcggagtattttattggtggcatatatacaataagact |
9879242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 355
Target Start/End: Original strand, 9879311 - 9879364
Alignment:
| Q |
302 |
ttttcactaacattaatatctttgaatggaacctgtatagaaactatggaaaca |
355 |
Q |
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||||||||||||||||| | || |||||||||| |||||||||||||||||||| |
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| T |
9879311 |
ttttcactaacattaattttttcgaatggaaccagtatagaaactatggaaaca |
9879364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 33098487 - 33098547
Alignment:
| Q |
112 |
acatttagttatggagtattttattggcggcatatatacaataagactgccaatctaatgc |
172 |
Q |
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| T |
33098487 |
acatttagttacagagtattttattggtggcaaatatacaataagactgccaatctaatgc |
33098547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 4479394 - 4479446
Alignment:
| Q |
106 |
agattgacatttagttatggagtattttattggcggcatatatacaataagact |
159 |
Q |
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| T |
4479394 |
agattgacatttagttacggagtattt-attggtggcatatatacaataagact |
4479446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 348
Target Start/End: Original strand, 33098586 - 33098638
Alignment:
| Q |
296 |
aaggagttttcactaacattaatatctttgaatggaacctgtatagaaactat |
348 |
Q |
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|||||||||||||||||||||| | ||||||||||||| ||||||||||||| |
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| T |
33098586 |
aaggagttttcactaacattaaattttttgaatggaaccagtatagaaactat |
33098638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 4479444 - 4479480
Alignment:
| Q |
190 |
acttcattcactgaatataacgcacaagtctatgtac |
226 |
Q |
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| T |
4479444 |
acttcattcactgaatataatgcacaagtctatgtac |
4479480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 355
Target Start/End: Original strand, 4479489 - 4479522
Alignment:
| Q |
322 |
tttgaatggaacctgtatagaaactatggaaaca |
355 |
Q |
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||||||||||||| |||||||||||||||||||| |
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| T |
4479489 |
tttgaatggaaccagtatagaaactatggaaaca |
4479522 |
T |
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