View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13421_low_10 (Length: 366)

Name: NF13421_low_10
Description: NF13421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13421_low_10
NF13421_low_10
[»] chr5 (3 HSPs)
chr5 (98-350)||(25510184-25510432)
chr5 (249-342)||(15458042-15458138)
chr5 (17-48)||(25510519-25510550)
[»] chr8 (4 HSPs)
chr8 (249-295)||(37802948-37802994)
chr8 (249-344)||(11032146-11032245)
chr8 (249-293)||(9185893-9185937)
chr8 (263-295)||(31822309-31822341)
[»] chr4 (3 HSPs)
chr4 (249-295)||(37478631-37478677)
chr4 (249-350)||(27383039-27383144)
chr4 (249-350)||(50132389-50132494)
[»] chr2 (5 HSPs)
chr2 (249-295)||(39282155-39282201)
chr2 (249-295)||(15806849-15806895)
chr2 (249-295)||(860727-860773)
chr2 (249-295)||(4415900-4415946)
chr2 (249-295)||(14000781-14000827)
[»] scaffold0092 (1 HSPs)
scaffold0092 (249-295)||(35330-35376)
[»] chr7 (3 HSPs)
chr7 (256-351)||(25972381-25972480)
chr7 (249-295)||(23965384-23965430)
chr7 (263-295)||(46811816-46811848)
[»] chr3 (3 HSPs)
chr3 (249-295)||(54093479-54093525)
chr3 (249-351)||(17260237-17260337)
chr3 (249-350)||(41624642-41624747)
[»] chr1 (4 HSPs)
chr1 (249-295)||(51545617-51545663)
chr1 (249-295)||(23172454-23172500)
chr1 (263-295)||(6576051-6576083)
chr1 (263-295)||(35479179-35479211)
[»] chr6 (3 HSPs)
chr6 (249-345)||(31209671-31209771)
chr6 (249-295)||(11164655-11164701)
chr6 (252-287)||(25171001-25171036)


Alignment Details
Target: chr5 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 98 - 350
Target Start/End: Complemental strand, 25510432 - 25510184
Alignment:
Q  98 ttatttatttattgacatgaagtatttgcttttgtttaactggacattgatggagctaacggcaggggtgtctttgttgagtaagaaacaataggggagg 197  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25510432 ttatttatttattgacatgaagtatttgcttttgtttaacggaacattgatggagctaacggcaggggtgtctttgttgagtaagaaacaataggggagg 25510333  T
Q  198 tggagtatattcacataaacctcacgggagagagattactgcaattttcccttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgcagc 297  Q
    |||||||||||||||||||||||| |||||     ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  25510332 tggagtatattcacataaacctcaggggagg----ttactgcaattttcccttatttcaaatgtgaggcctaagaaaacaccagtgaggggtcctgtagc 25510237  T
Q  298 tggacatctgctcctggtgttattagagtatcatatctaagttatggttcatc 350  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||||||||||    
T  25510236 tggacatctgctcctggcgttattagagtaccatatctaagttatggttcatc 25510184  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 342
Target Start/End: Complemental strand, 15458138 - 15458042
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgcagctggacat----ctgctcctggtgttattagagtatcatatctaagttat 342  Q
    |||||||||||| ||| ||||||||| |||||||||||||||||||| | | ||||    |||||||||  |||||||||||| |||||| |||||||    
T  15458138 ttatttcaaatgagag-cctaagcaagcaccagtgaggggtcctgcatcagcacatccaactgctcctgacgttattagagtaccatatccaagttat 15458042  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 25510550 - 25510519
Alignment:
Q  17 agttgggtagtaaatgaatgttgaagttttct 48  Q
    ||||||||||||||||||||||||||||||||    
T  25510550 agttgggtagtaaatgaatgttgaagttttct 25510519  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 37802948 - 37802994
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  37802948 ttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgca 37802994  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 344
Target Start/End: Complemental strand, 11032245 - 11032146
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgcagctggacat----ctgctcctggtgttattagagtatcatatctaagttatgg 344  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||| || | | ||||    ||||| |||  |||||||||||| |||||| |||||||||    
T  11032245 ttatttcaaatgagaggcctaaacaaacaccagttaggggtcctacaccagcacatccaactgcttctgccgttattagagtaccatatccaagttatgg 11032146  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 293
Target Start/End: Original strand, 9185893 - 9185937
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctg 293  Q
    |||||||||||| |||||| ||||||||| |||||||||||||||    
T  9185893 ttatttcaaatgagaggccaaagcaaacaacagtgaggggtcctg 9185937  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 31822309 - 31822341
Alignment:
Q  263 aggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||||||||| ||||||||||||||    
T  31822309 aggcctaagcaaacaccaatgaggggtcctgca 31822341  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 37478677 - 37478631
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  37478677 ttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgca 37478631  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 350
Target Start/End: Original strand, 27383039 - 27383144
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgcagctggacat----ctgctcctggtgttattagagtatcatatctaagttatgg 344  Q
    |||||| ||||| ||||||||  ||||||| |||||||||||||||| | | ||||    |||||||||  |||||||||||  |||||| || ||||||    
T  27383039 ttattttaaatgagaggcctagtcaaacactagtgaggggtcctgcaccagcacatccaactgctcctgacgttattagagttccatatccaaattatgg 27383138  T
Q  345 ttcatc 350  Q
    ||||||    
T  27383139 ttcatc 27383144  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 350
Target Start/End: Original strand, 50132389 - 50132494
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgcagctggacat----ctgctcctggtgttattagagtatcatatctaagttatgg 344  Q
    |||||||||||| ||| |||||||||||| || |||||| ||||||| | | ||||    |||||||||  |||||||||||| |||||| || ||||||    
T  50132389 ttatttcaaatgagagacctaagcaaacatcaatgagggatcctgcaccagcacatccaactgctcctgacgttattagagtaccatatccaaattatgg 50132488  T
Q  345 ttcatc 350  Q
    | ||||    
T  50132489 tccatc 50132494  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 39282155 - 39282201
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  39282155 ttatttcaaatgagaggcctaagcaaacaccagtgaggggtcctgca 39282201  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 15806895 - 15806849
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  15806895 ttatttcaaatgagagacctaagcaaacaccagtgaggggtcctgca 15806849  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 860773 - 860727
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||| ||||||||||||||||||||||||| || |||||    
T  860773 ttatttcaaatgagaggcctaagcaaacaccagtgaggagttctgca 860727  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 4415946 - 4415900
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||| |||||||||| |||||| ||||||||||||||||    
T  4415946 ttatttcaaatgagaggcctaagaaaacactagtgaggggtcctgca 4415900  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 14000781 - 14000827
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||| ||||||||| ||||||||| ||||||||| ||||    
T  14000781 ttatttcaaatgagaggcctaaacaaacaccaatgaggggtcttgca 14000827  T

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Target: scaffold0092 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 35376 - 35330
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||    
T  35376 ttatttcaaatgagaggcctaagcaaacaccaatgaggggtcctgca 35330  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 351
Target Start/End: Complemental strand, 25972480 - 25972381
Alignment:
Q  256 aaatgtgaggcctaagcaaacaccagtgaggggtcctgcagctggacatc----tgctcctggtgttattagagtatcatatctaagttatggttcatct 351  Q
    ||||| ||||||||| ||||||||| ||||||||||  || | |||||||    ||||||||| |||||||||||| |||||| || |||||||||||||    
T  25972480 aaatgagaggcctaaacaaacaccaatgaggggtcccacaccaggacatccaactgctcctggcgttattagagtaccatatccaaattatggttcatct 25972381  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 23965384 - 23965430
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||| ||||||||||||||||||| ||||||||| ||||    
T  23965384 ttatttcaaatgagaggcctaagcaaacaccattgaggggtcttgca 23965430  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 46811848 - 46811816
Alignment:
Q  263 aggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||||||||| ||||||||||||||    
T  46811848 aggcctaagcaaacaccaatgaggggtcctgca 46811816  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 54093479 - 54093525
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||    
T  54093479 ttatttcaaatgagaggcctaagcaaacatcagtgaggggtcctgca 54093525  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 249 - 351
Target Start/End: Original strand, 17260237 - 17260337
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaa-caccagtgaggggtcctgcagctggacatctgctcctggtgttattagagtatcatatctaagttatggttc 347  Q
    |||||||||||| || | ||||||||| |||||||||| ||||||||| | | ||||||   ||||||||||||||| ||| ||||| || ||||||| |    
T  17260237 ttatttcaaatgggaagtctaagcaaaacaccagtgagtggtcctgcaccagcacatct---cctggtgttattagaatattatatccaacttatggtcc 17260333  T
Q  348 atct 351  Q
    ||||    
T  17260334 atct 17260337  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 350
Target Start/End: Original strand, 41624642 - 41624747
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgcagctggacat----ctgctcctggtgttattagagtatcatatctaagttatgg 344  Q
    |||||||||||| |||| |||| ||||||||| |||| | ||||||| | | ||||    |||||||||| |||||||||||| |||||| || ||||||    
T  41624642 ttatttcaaatgagaggtctaaacaaacaccaatgagagatcctgcaccagcacatcctactgctcctggcgttattagagtaccatatccaaattatgg 41624741  T
Q  345 ttcatc 350  Q
    | ||||    
T  41624742 tccatc 41624747  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 51545617 - 51545663
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||    
T  51545617 ttatttcaaatgagaggcctaagcaaacaccggtgaggggtcctgca 51545663  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 23172454 - 23172500
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||| |||||||| ||||| |||||||||||||||||||    
T  23172454 ttatttcaaatgagaggcctacgcaaaaaccagtgaggggtcctgca 23172500  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 295
Target Start/End: Original strand, 6576051 - 6576083
Alignment:
Q  263 aggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||||||||| ||||||||||||||    
T  6576051 aggcctaagcaaacaccaatgaggggtcctgca 6576083  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 295
Target Start/End: Complemental strand, 35479211 - 35479179
Alignment:
Q  263 aggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||||||||| ||||||||||||||    
T  35479211 aggcctaagcaaacaccaatgaggggtcctgca 35479179  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 345
Target Start/End: Original strand, 31209671 - 31209771
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgcagctggacat----ctgctcctggtgttattagagtatcatatctaagttatgg 344  Q
    |||||| ||||| |||||||||| |||||||||||||||||| ||||     ||||    |||||||||| |||||||||||| |||||| |||||||||    
T  31209671 ttattttaaatgagaggcctaagaaaacaccagtgaggggtcatgcacaaacacatccaactgctcctggcgttattagagtaccatatccaagttatgg 31209770  T
Q  345 t 345  Q
    |    
T  31209771 t 31209771  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 11164655 - 11164701
Alignment:
Q  249 ttatttcaaatgtgaggcctaagcaaacaccagtgaggggtcctgca 295  Q
    |||||||||||| ||| |||||||||| |||||||||||||||||||    
T  11164655 ttatttcaaatgagagacctaagcaaataccagtgaggggtcctgca 11164701  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 287
Target Start/End: Complemental strand, 25171036 - 25171001
Alignment:
Q  252 tttcaaatgtgaggcctaagcaaacaccagtgaggg 287  Q
    ||||||||| ||||||||||||||||||||||||||    
T  25171036 tttcaaatgagaggcctaagcaaacaccagtgaggg 25171001  T

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