View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13421_low_11 (Length: 361)
Name: NF13421_low_11
Description: NF13421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13421_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 200 - 344
Target Start/End: Original strand, 25504993 - 25505137
Alignment:
| Q |
200 |
ctagcttaagactaactagtggtccttaatataaattcagttaatactcaaatatttttaaaggcttactatttaatatgttcaatagtcacttgttagc |
299 |
Q |
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| T |
25504993 |
ctagcttaagactaactagtggtccttaatattaattcagttaatactcaaatatttttaaaggcttactatttaatatgttcaatagtcacttgttagc |
25505092 |
T |
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| Q |
300 |
accttaataatgtatggtaagtggtttcttacttcgtcaaatttt |
344 |
Q |
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| T |
25505093 |
accttaataatgtatggtaagtggtttcttacttcgtcaaatttt |
25505137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 128 - 205
Target Start/End: Original strand, 25504868 - 25504946
Alignment:
| Q |
128 |
ggtaaaattttgtaacaagatcttaaa-ctgacgatagtaaggttcttaatataaattcaggtcattcgtaagctagct |
205 |
Q |
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| T |
25504868 |
ggtaaaattttgtaacaagatcttaaaactgacgatagtaacgttcttaatataaattcaggtcattcgtaagctagct |
25504946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 112
Target Start/End: Original strand, 25504821 - 25504855
Alignment:
| Q |
78 |
aagacaaagcagtgaatctgatcttaaattaatga |
112 |
Q |
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| T |
25504821 |
aagacaaagcagtgaatctgatcttaaattaatga |
25504855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 30969647 - 30969679
Alignment:
| Q |
311 |
gtatggtaagtggtttcttacttcgtcaaattt |
343 |
Q |
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| T |
30969647 |
gtatggtaagtggtttcttatttcgtcaaattt |
30969679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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