View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13421_low_12 (Length: 354)
Name: NF13421_low_12
Description: NF13421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13421_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 47502167 - 47502493
Alignment:
| Q |
1 |
gtgtatgatcaataggtgggtcctcgagcagacaaggacagggaaacatttccagcagcaacaaataacatgataatggtgcttgcaggcgcaggactgc |
100 |
Q |
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| T |
47502167 |
gtgtatgatcaataggtgggtcctcgagcagacaaggacagggaaacatttccagcagcaacaaataacatgataatggtgcttgcaggcgcaggactgc |
47502266 |
T |
|
| Q |
101 |
tttggatgggttggagtggattcaacggtggagctccatttgtggctagtaccattgcatctcttgctatccttaacacacacgtgtgtactgctgctag |
200 |
Q |
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| T |
47502267 |
tttggatgggttggagtggattcaacggtggagctccatttgtggctagtaccattgcatctcttgctatccttaacacacacgtgtgtactgctgctag |
47502366 |
T |
|
| Q |
201 |
catcatggtatgggtcatgcttgataccttctactttggcaagcctactgtgtttggcgccgtacagggcatgatcactggtcttgtttgcattacacct |
300 |
Q |
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| T |
47502367 |
catcacggtatgggtcatgcttgataccttctactttggcaagcctactgtgtttggcgccgtacagggcatgatcactggtcttgtttgcattacacct |
47502466 |
T |
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| Q |
301 |
gccgcaggtacacacaatcataatgtc |
327 |
Q |
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| T |
47502467 |
gccgcaggtacacacaatcataatgtc |
47502493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 7963714 - 7963627
Alignment:
| Q |
151 |
accattgcatctcttgctatccttaacacacacgtgtgtactgctgctagcatcatggtatgggtcatgcttgataccttctactttg |
238 |
Q |
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| T |
7963714 |
accattgcatctcttgctgtcctaacaacacacgtgtgtactgctgctagcatcatggtatgggtcatgctggataccttctactttg |
7963627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 151 - 238
Target Start/End: Complemental strand, 33058425 - 33058338
Alignment:
| Q |
151 |
accattgcatctcttgctatccttaacacacacgtgtgtactgctgctagcatcatggtatgggtcatgcttgataccttctactttg |
238 |
Q |
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||||||| |||||||||| |||| | |||| |||| |||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33058425 |
accattgtatctcttgctgtcctaaccacaaacgtatgtactactgctagcatcatggtatgggtcatgctggataccttctactttg |
33058338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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