View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13421_low_15 (Length: 308)
Name: NF13421_low_15
Description: NF13421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13421_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 54080709 - 54080954
Alignment:
| Q |
1 |
tcgacatattgtattggaacatgtcataaatcatgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatccaaatccaaatatgccacg |
100 |
Q |
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| T |
54080709 |
tcgacatattgtattggaacatgtcataaatcatgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatccaaatccaaatatgccacg |
54080808 |
T |
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| Q |
101 |
caaatatgatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaaaacaagagcattcagcagctataa--atacttcaa |
198 |
Q |
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| T |
54080809 |
caaatatgatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaaaactagagcattcagcggctataaatatacttcaa |
54080908 |
T |
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| Q |
199 |
aacctcttcagagtatcaacaacaaatacactgcataccctctaaa |
244 |
Q |
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| T |
54080909 |
aacctcttcagagtatcaacaacaaatacactgcataccctctaaa |
54080954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 54084071 - 54084228
Alignment:
| Q |
8 |
attgtattggaacatgtcataaatcatgcgaatgtgcatgttcaaggggcttcaaccacaagtttttgttcatccaaatccaaatatgccacgcaaatat |
107 |
Q |
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| T |
54084071 |
attgtattggcacatgccataaatcatgccaatgagcaagttcaaggcgtttcaaccacaagtttttatccatccaaattcaaatatgccacgccaatat |
54084170 |
T |
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| Q |
108 |
gatttcccccactttctagcctcaaacttaaaataatcattccacatgttcacaccaa |
165 |
Q |
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| T |
54084171 |
gatctcctctactttctagcctcaaacttaaaataatcattccgcattttcacaccaa |
54084228 |
T |
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