View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13421_low_18 (Length: 234)
Name: NF13421_low_18
Description: NF13421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13421_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 38 - 172
Target Start/End: Original strand, 1183212 - 1183342
Alignment:
| Q |
38 |
gtgaagtggaaaatcctttgaagctgaaatttaataacaaacaaataagctattaatctagctaagaatcctatagcacatggaagaagtaaacacgttg |
137 |
Q |
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| T |
1183212 |
gtgaagtagaaaatcctttgaagctgaaatttaataaca----aataagctattaatctagctaagaatcctatagcacatggaagaagtaaacacgttg |
1183307 |
T |
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| Q |
138 |
aaactaggttatatttcatcatggaacaagtgaca |
172 |
Q |
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| T |
1183308 |
aaactaggttatatttcatcatggaacaagtgaca |
1183342 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 1183580 - 1183627
Alignment:
| Q |
174 |
tttcattaattaatgaaaaccataacaaacttctaacactttcttctc |
221 |
Q |
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| T |
1183580 |
tttcattaattaatgaaaaccataacaaacttcaaacactttcttctc |
1183627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 5243516 - 5243601
Alignment:
| Q |
87 |
ctattaatctagctaagaatcctatagcacatggaagaagtaaacacgttgaaactaggttatatttcatcatggaacaagtgaca |
172 |
Q |
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| T |
5243516 |
ctataaatttagctaacaatctaataacacatggtaggagaaaacacattgaaactaggtttcatttcataagggaacaagtgaca |
5243601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 32368201 - 32368156
Alignment:
| Q |
102 |
agaatcctatagcacatggaagaagtaaacacgttgaaactaggtt |
147 |
Q |
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| T |
32368201 |
agaatccaatagcacatggcaggagtaaacacattgaaactaggtt |
32368156 |
T |
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