View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13421_low_19 (Length: 232)
Name: NF13421_low_19
Description: NF13421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13421_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 3229874 - 3229972
Alignment:
| Q |
1 |
tcaaagacatttggaaataacataagagattgacactcttattaaaacatgagcactaccaataatctgtcacaaaaaatagttataagggtatcaatag |
100 |
Q |
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| T |
3229874 |
tcaaagacatttggaaataacataagagattgacactcttattaaaacatgagcactaccaataatttgtcacaaaaaatagttataa-ggtatcaatag |
3229972 |
T |
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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 3229971 - 3230026
Alignment:
| Q |
129 |
agaagttaggttgatacctccttctgttt-gcaatttaattttttctcgccttgat |
183 |
Q |
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| T |
3229971 |
agaagttaggttcatacctccttctgttttgcaatttaattttttctcgccttgat |
3230026 |
T |
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