View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13421_low_3 (Length: 476)

Name: NF13421_low_3
Description: NF13421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13421_low_3
NF13421_low_3
[»] chr2 (5 HSPs)
chr2 (1-244)||(9115958-9116201)
chr2 (271-397)||(9116193-9116319)
chr2 (395-471)||(9116414-9116489)
chr2 (395-471)||(9521075-9521150)
chr2 (427-471)||(27322740-27322784)
[»] chr7 (1 HSPs)
chr7 (395-471)||(30486961-30487036)
[»] chr5 (4 HSPs)
chr5 (399-471)||(24233167-24233238)
chr5 (419-471)||(28988425-28988477)
chr5 (418-471)||(36603728-36603781)
chr5 (419-471)||(21067607-21067659)
[»] chr1 (3 HSPs)
chr1 (399-471)||(34663101-34663172)
chr1 (395-471)||(32022625-32022700)
chr1 (427-468)||(19940640-19940681)
[»] chr4 (2 HSPs)
chr4 (399-470)||(19328813-19328883)
chr4 (418-468)||(3427860-3427910)
[»] scaffold0272 (1 HSPs)
scaffold0272 (418-471)||(6098-6151)
[»] chr3 (2 HSPs)
chr3 (418-470)||(42388732-42388784)
chr3 (395-471)||(8936091-8936166)
[»] chr8 (1 HSPs)
chr8 (395-471)||(9799261-9799336)


Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 9115958 - 9116201
Alignment:
Q  1 ggtttgttggtcgagctatttcgaattcagcagcaagggaaacttcgattatgtaacgttttcctgaaagattgacatcattgtactcatagtccccagc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9115958 ggtttgttggtcgagctatttcgaattcagcagcaagggaaacttcgattatgtaacgttttcctgaaagattgacatcaatgtactcatagtccccagc 9116057  T
Q  101 tgttaatttcccccttttttcccatttggttttgcataaccctgcacaaagagtaacaatgtcaatatttggcttcaatttaaatgcaataatatatcac 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  9116058 tgttaatttcccctttttttcccatttggttttgcataaccctgcacaaagagtaacaatgtcaatattttgcttgaatttaaatgcaataatatatcac 9116157  T
Q  201 tccttgtacttcatatctctagcttagagattaaggtgctccaa 244  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||    
T  9116158 tccttgtactttatatctctagcttagagataaaggtgctccaa 9116201  T

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Target: chr2; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 271 - 397
Target Start/End: Original strand, 9116193 - 9116319
Alignment:
Q  271 gtgctccaagtcaatattatataaaggggatcactttatgcattcatgtgatacttcatttggactgtttgattgagatcaaatgactcaaactagcttt 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9116193 gtgctccaagtcaatattatataaaggggatcactttatgcattcacgtgatacttcattttgactgtttgattgagatcaaatgactcaaactagcttt 9116292  T
Q  371 atattttggataaaatttataggcaat 397  Q
    |||||||||||| ||||||||||||||    
T  9116293 atattttggatacaatttataggcaat 9116319  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 395 - 471
Target Start/End: Original strand, 9116414 - 9116489
Alignment:
Q  395 aataaaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactc 471  Q
    |||||||||||| ||||||||||||||  |||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  9116414 aataaaagtaacactttgtatacttttc-aaaagttgacagcacaagttccaatgcaatatttaccacatttgactc 9116489  T

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Target: chr2; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 471
Target Start/End: Original strand, 9521075 - 9521150
Alignment:
Q  395 aataaaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactc 471  Q
    |||||||||||| |||| |||||||||  |||||||||| ||||||||||||||| |||||||| ||||||||||||    
T  9521075 aataaaagtaacactttttatacttttc-aaaagttgacagcacaagtttcaatgtaatacttatcacatttgactc 9521150  T

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Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 427 - 471
Target Start/End: Complemental strand, 27322784 - 27322740
Alignment:
Q  427 agttgacggcacaagtttcaatgcaatacttaccacatttgactc 471  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||    
T  27322784 agttgacagcacaagttccaatgcaatacttaccacatttgactc 27322740  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 395 - 471
Target Start/End: Original strand, 30486961 - 30487036
Alignment:
Q  395 aataaaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactc 471  Q
    ||||||||||||  ||| |||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||||||    
T  30486961 aataaaagtaacattttttatatttttt-aaaagttgacggcacaaatttcaatgcaatacttacgacatttgactc 30487036  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 471
Target Start/End: Complemental strand, 24233238 - 24233167
Alignment:
Q  399 aaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactc 471  Q
    |||||||| |||| |||| |||||||||||||||| ||||||||| ||||||||||||||  |||||||||||    
T  24233238 aaagtaacactttttata-tttttgaaaagttgacagcacaagttccaatgcaatacttattacatttgactc 24233167  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 471
Target Start/End: Original strand, 28988425 - 28988477
Alignment:
Q  419 ttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactc 471  Q
    |||||||||||||||| ||||| |||||||| |||| ||||||||||||||||    
T  28988425 ttttgaaaagttgacgacacaaatttcaatgtaataattaccacatttgactc 28988477  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Original strand, 36603728 - 36603781
Alignment:
Q  418 tttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactc 471  Q
    |||||||| |||||||  |||||||| |||||||||||||||  ||||||||||    
T  36603728 tttttgaagagttgacaacacaagttccaatgcaatacttactgcatttgactc 36603781  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 471
Target Start/End: Complemental strand, 21067659 - 21067607
Alignment:
Q  419 ttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactc 471  Q
    ||||||| || ||||  |||||||||||||| ||||||||| |||||||||||    
T  21067659 ttttgaagagatgacaacacaagtttcaatgtaatacttactacatttgactc 21067607  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 399 - 471
Target Start/End: Complemental strand, 34663172 - 34663101
Alignment:
Q  399 aaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactc 471  Q
    |||||||| |||| ||||||||| ||||||||||| | ||||||| |||| ||||||||||||||||||||||    
T  34663172 aaagtaacactttttatactttt-gaaaagttgacagtacaagttccaatacaatacttaccacatttgactc 34663101  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 471
Target Start/End: Original strand, 32022625 - 32022700
Alignment:
Q  395 aataaaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactc 471  Q
    |||||||||||  |||| |||||||||  |||||||||| | |||| |||||||| |||||||||||||||||||||    
T  32022625 aataaaagtaatactttttatactttta-aaaagttgacagtacaattttcaatgtaatacttaccacatttgactc 32022700  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 468
Target Start/End: Original strand, 19940640 - 19940681
Alignment:
Q  427 agttgacggcacaagtttcaatgcaatacttaccacatttga 468  Q
    ||||||| ||| ||||||||||||||||||||| ||||||||    
T  19940640 agttgacagcataagtttcaatgcaatacttactacatttga 19940681  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 399 - 470
Target Start/End: Complemental strand, 19328883 - 19328813
Alignment:
Q  399 aaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgact 470  Q
    |||||||| |||| ||||||||| ||| ||||||  ||||||||| ||||| ||||||||||||||||||||    
T  19328883 aaagtaacactttttatactttt-gaagagttgatagcacaagttccaatgtaatacttaccacatttgact 19328813  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 418 - 468
Target Start/End: Complemental strand, 3427910 - 3427860
Alignment:
Q  418 tttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttga 468  Q
    |||||||| |||||||  ||||||||||||| |||||||||| ||||||||    
T  3427910 tttttgaagagttgacaacacaagtttcaatacaatacttactacatttga 3427860  T

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Target: scaffold0272 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 6151 - 6098
Alignment:
Q  418 tttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactc 471  Q
    |||||||||||||||| ||| || || ||||||||||||||| |||||||||||    
T  6151 tttttgaaaagttgacagcataaattccaatgcaatacttactacatttgactc 6098  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 470
Target Start/End: Complemental strand, 42388784 - 42388732
Alignment:
Q  418 tttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgact 470  Q
    |||||||||||||||| |||||| || |||| |||||||||| ||||||||||    
T  42388784 tttttgaaaagttgacagcacaaattccaatacaatacttactacatttgact 42388732  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 471
Target Start/End: Original strand, 8936091 - 8936166
Alignment:
Q  395 aataaaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactc 471  Q
    |||||||||||| |||| ||| |||||  ||  |||||| ||||||||||||||| ||||||| |||||||| ||||    
T  8936091 aataaaagtaacactttttatgcttttc-aagggttgacagcacaagtttcaatgtaatacttgccacatttaactc 8936166  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 395 - 471
Target Start/End: Original strand, 9799261 - 9799336
Alignment:
Q  395 aataaaagtaaccctttgtatactttttgaaaagttgacggcacaagtttcaatgcaatacttaccacatttgactc 471  Q
    |||||| ||||| |||| |||||||||  || |||||||  |||||||| ||||| |||||||||||||||| ||||    
T  9799261 aataaaggtaacactttttatacttttc-aagagttgacaacacaagttccaatgtaatacttaccacatttaactc 9799336  T

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