View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13421_low_5 (Length: 458)
Name: NF13421_low_5
Description: NF13421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13421_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 8 - 254
Target Start/End: Complemental strand, 22346525 - 22346272
Alignment:
| Q |
8 |
cagcacagagtgagaaagagtcagagataaactgagtgtgttaatgcttagattgcacttaaatagtgacatagattgcattgtatctctcttattaata |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22346525 |
cagcacagagtgagaaagagtcagagataaactgagtgtgttaatgcttagattgcacttaaatagtgacatagattgcattgtatctctcttattaata |
22346426 |
T |
|
| Q |
108 |
aattctcactctttcataaacattaattcatctctttacattttttatattgaacaatgatga-------gcaagtgttgaaatgctttgtgcttgaagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
22346425 |
aattctcactctttcataaacattaattcatctctttacattttttatattgaacaatgatgatgtgtctttgagtgttgaaatgttttgtgcttgaagc |
22346326 |
T |
|
| Q |
201 |
acttgcatactgtttctcttcttctgtttgataggtatgaactatgaaccttgc |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22346325 |
acttgcatactgtttctcttcttctgtttgataggtatgaactatgaaccttgc |
22346272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 307 - 394
Target Start/End: Complemental strand, 22346216 - 22346129
Alignment:
| Q |
307 |
agattgttgaaattttataacaattttttctattttgagatcaaaatttgaaatgatagtaatggattttaattggaaaaatggcttg |
394 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22346216 |
agattgttgaatttttataacatttttttctattttgagatcaaaatttgaaatggtagtaatggattttaattggaaaaatggcttg |
22346129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 443
Target Start/End: Complemental strand, 22346050 - 22346004
Alignment:
| Q |
397 |
ctagtgatagtgtgtagaatgtttttctctataaaaggatgtttctg |
443 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22346050 |
ctagtggtagtgtgtagaatgtttttctctataaaaggatgtttctg |
22346004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University