View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13421_low_6 (Length: 434)
Name: NF13421_low_6
Description: NF13421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13421_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 32712488 - 32712077
Alignment:
| Q |
19 |
ttccaagcagactacagttacaagatcgtggagttgctttttctactaattgcgcattgtgtgataaaggtttggaagatagtattgatctatgttttca |
118 |
Q |
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| T |
32712488 |
ttccaagcagactacagttagaagatcgtggagttgcttgttctactaattgcgcattgtgtgataaagatttggaagatagaattgatctatgttttca |
32712389 |
T |
|
| Q |
119 |
ttgtctaagtactgttcacagttggcagagaacggagctggtccaacactcattgaggcctgaagtgaggttatgctaaaaggttggtgacaggcacgga |
218 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
32712388 |
ttgtctaagtagtgttcacagttggcagagaacggagctggtccaacactcattgaggcctaaagtgaggttatgctaaaaggttggtgacaggcacgga |
32712289 |
T |
|
| Q |
219 |
caactccgcctagcacgaatatttcatggcttcataaattatcggatagaatatgtatcctgttgttggaaagtaggaagnnnnnnnncctttgattaca |
318 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
32712288 |
caactccgcctagcacgaagatttcatggcttcataaattatcggatagaatatgtatcctgttgctggaaagtaggaagaaaaaaaacctttgattaca |
32712189 |
T |
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| Q |
319 |
gaacaatagcagcacttggaggatatccacctcccactgccataaggccctattactctcaaatgacaagatgccattatctacccctttctttctattt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32712188 |
gaacaatagcagcacttggaggatatccacctcccactgccataaggccctattactctcaaatgacaagatgccattatctacccctttctttctattt |
32712089 |
T |
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| Q |
419 |
ataagctataac |
430 |
Q |
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| T |
32712088 |
ataagctataac |
32712077 |
T |
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