View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13421_low_7 (Length: 390)
Name: NF13421_low_7
Description: NF13421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13421_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 9 - 374
Target Start/End: Complemental strand, 9385505 - 9385140
Alignment:
| Q |
9 |
acatcatcatcaaaactctctctcaagcaacattcatttggaagcagagaaaattcagagtgacttagtagggcttgcagagatttacaattgtatggaa |
108 |
Q |
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| T |
9385505 |
acatcatcatcaaaactctctctcaagcaacattcatttggaagcagagaaaattcagagtgacttagtagggcttgcagagatttacaattgtatggaa |
9385406 |
T |
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| Q |
109 |
gaactcttcaactctccacaaactcaacaatctcttctacgttaccaagatggaaaactcatatcagattcattgtgtagctcaatcacattgctagatg |
208 |
Q |
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| T |
9385405 |
gaactcttcaactctccacaaactcaacaatctcttctacgttaccaagatggaaaactcatatcagattcattgtgtagctcaatcacattgctagatg |
9385306 |
T |
|
| Q |
209 |
cttgtgagtgttcaagggatttattattggttcttagagaacatatacaaacacttcaatcagcaatacgtagaagaagaaaaggtgattcaagcattga |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9385305 |
cttgtgagtgttcaagggatttattattggttcttagagaacatatacaaacacttcaatcagcaatacgtagaagaagaaaaggtgattcaagcattga |
9385206 |
T |
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| Q |
309 |
aaacagtgtttcttcttatgaaaatttcagaaagaaggcaaagaagaaaatttcataccaactttt |
374 |
Q |
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| T |
9385205 |
aaacagtgtttcttcttatgaaaatttcagaaagaaggcaaggaagaaaatttcataccaactttt |
9385140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 328 - 374
Target Start/End: Complemental strand, 31948271 - 31948225
Alignment:
| Q |
328 |
gaaaatttcagaaagaaggcaaagaagaaaatttcataccaactttt |
374 |
Q |
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| T |
31948271 |
gaaaatttcagaaagaaggcaaagaagaaaatttcataccaattttt |
31948225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 31454992 - 31455077
Alignment:
| Q |
53 |
cagagaaaattcagagtgacttagtagggcttgcagagatttacaattgtatggaagaactcttcaactctccacaaactcaacaa |
138 |
Q |
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|||||| |||||| ||||| || || | |||||| ||| | |||||||| ||||||||||||||| | |||| |||||| |||||| |
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| T |
31454992 |
cagagacaattcaaagtgatttggttgtgcttgctgagttatacaattgcatggaagaactcttccaatctcaacaaacacaacaa |
31455077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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