View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13422_low_4 (Length: 395)
Name: NF13422_low_4
Description: NF13422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13422_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 2185262 - 2184903
Alignment:
| Q |
13 |
atcatcaataggtggagattctcctggaagctctgtccatctctgtagagaaaaagagaaagccagtcagtactaagcccgttaggtaatgacgagcaga |
112 |
Q |
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| T |
2185262 |
atcatcaataggtggagattctcctggaagctctgtccatctctgtagagaaaaagagaaagccagtcagtactaagcccgttaggtaatgacaagcaga |
2185163 |
T |
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| Q |
113 |
tggatgcaaaatgaactaatgaaggtttggacagttaagtacagttcggatgtataaatatccggatagacgagctgaccgtaaaatttcatcaatattt |
212 |
Q |
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| T |
2185162 |
tggatgcaaaatgaactaatgaaggtttggacagttaagtacagttcggatgtataaatatccggatagacgagctgaccgtaaaatttcatcaatattt |
2185063 |
T |
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| Q |
213 |
tccaacctgtgtcaaataaaaagatcaaagttatgtatggaaaacacaaaaagtattccccagataggggagggctggataaagattaaacactgaattt |
312 |
Q |
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| T |
2185062 |
tccaacctgtgtcatataaaaagatcaaggttatgtatagaaaacacaaaaagtattccccagataggggagggctggataaagattaaacactgaattt |
2184963 |
T |
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| Q |
313 |
caactccaacgtcaagtagctgcctttaacagctttaacagcaaaaagaatcatgtgtgt |
372 |
Q |
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| T |
2184962 |
caactccaacgtcaagtagctgcctttaacagctttaacagcaaaaagaatcatgtgtgt |
2184903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 41962413 - 41962487
Alignment:
| Q |
150 |
agtacagttcggatgtataaatatccggatagacgagctgaccgtaaaatttcatcaatattttccaacctgtgt |
224 |
Q |
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| T |
41962413 |
agtacagttctaatgtttaaatagccagatagacgagctgaccgcagaacttcatcaatatgttgcaacctgtgt |
41962487 |
T |
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