View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13422_low_5 (Length: 304)
Name: NF13422_low_5
Description: NF13422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13422_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 23 - 283
Target Start/End: Complemental strand, 14088058 - 14087803
Alignment:
| Q |
23 |
ctaaccataactcgactaatcacacgtgaaaccacattgtagttcatttgatcgagaaaaaa--gattgaacctttgtcagaaaaaagaacaaatcaaag |
120 |
Q |
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| T |
14088058 |
ctaaccataactcgactaatcacacgtgaaaccacattgtagttcatttgatccaaaaaaaaaagattgaacctttgtcagaaaaaagaacaaaccaaag |
14087959 |
T |
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| Q |
121 |
ttcgactaatcgtatgaagcctcattgtagttcattttattaactagaagaaatgtcaaacctttgtnnnnnnnncaaactaaccacaattcgactgatc |
220 |
Q |
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| T |
14087958 |
ttcgactaatcgtatgaagtctcattgtagttcatt---ttaactagaagaaatgtcaaacctttgtcgaaaaaacaaactaaccacaattcgactgatc |
14087862 |
T |
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| Q |
221 |
ataagtgaagtgtcactgtagtttatttgattcagtagaacagactgacttttgtttgtgcat |
283 |
Q |
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| T |
14087861 |
ataagtgacgtatcactgtagtttatttgattcagtaga----actgacttttgtttgtgcat |
14087803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 33 - 236
Target Start/End: Complemental strand, 14088692 - 14088492
Alignment:
| Q |
33 |
ctcgactaatcacacgtgaaaccacattgtagttcatttgatcgagaaaaaagattgaacctttgtcagaaaaaagaacaaatcaaagttcgactaatcg |
132 |
Q |
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| T |
14088692 |
ctcgactaatcacaagtgaaaccacattgtagttcatctgatccag-aaaaagattgaacctttgtca-aaaaggaaacaaaccaaagttcgactgatca |
14088595 |
T |
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| Q |
133 |
ta--tgaagcctcattgtagttcattttattaactagaagaaatgtcaaacctttgtnnnnnnnncaaactaaccacaattcgactgatcataagtgaag |
230 |
Q |
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| T |
14088594 |
taagtgaagtctcgttatagtccatttgat---cgagaagaaatgtcagacctttctcgaaaaagaaaactaaccaaaattcaactcatcataagtgaag |
14088498 |
T |
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| Q |
231 |
tgtcac |
236 |
Q |
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|||||| |
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| T |
14088497 |
tgtcac |
14088492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 236
Target Start/End: Complemental strand, 14078357 - 14078155
Alignment:
| Q |
31 |
aactcgactaatcacacgtgaaaccacattgtagttcatttgatcgagaaaaaagattgaacctttgtcagaaaaaagaacaaatcaaagttcgactaat |
130 |
Q |
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|||||| ||||||||| ||||||||| ||||||||||| |||| | |||| ||||||| | ||||||||| | | || ||| ||||||||||||||| |
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| T |
14078357 |
aactcggctaatcacaagtgaaaccatgttgtagttcatctgattca-aaaatagattgagcttttgtcagatagca-aataaaccaaagttcgactaat |
14078260 |
T |
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| Q |
131 |
cgta--tgaagcctcattgtagttcattttattaactagaagaaatgtcaaacctttgtnnnnnnnncaaactaaccacaattcgactgatcataagtga |
228 |
Q |
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| T |
14078259 |
cataagtgaagtctcgttgtagttcatttgat---ctagaagaaatgtcaaacctttctcggaaaaacaaattaaccacaatttgactaatcataggtga |
14078163 |
T |
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| Q |
229 |
agtgtcac |
236 |
Q |
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|||||||| |
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| T |
14078162 |
agtgtcac |
14078155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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