View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13422_low_8 (Length: 234)
Name: NF13422_low_8
Description: NF13422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13422_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 96
Target Start/End: Complemental strand, 6241104 - 6241033
Alignment:
| Q |
25 |
ttttttatacatgaaagtaacaattgttttaatttttaaatcactgacatttgttagcgaaaccttttaaaa |
96 |
Q |
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| T |
6241104 |
ttttttatacatgaaagtaacaattgttttcatttttaaatcactgacatttgttagcgaaaccctttaaaa |
6241033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 6212075 - 6212011
Alignment:
| Q |
161 |
gaaggatacaaatgaaaataaaattattctttttccaacacaatttcctatctcctctctgatga |
225 |
Q |
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| T |
6212075 |
gaaggatacaaatgaaaacaaaattattctttttccaacacaatttcctatctcctctctgatga |
6212011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 6240968 - 6240904
Alignment:
| Q |
161 |
gaaggatacaaatgaaaataaaattattctttttccaacacaatttcctatctcctctctgatga |
225 |
Q |
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| T |
6240968 |
gaaggataaaaatgaaaataaaattattctttttccaacacaatttcctatctcctctctgatga |
6240904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 6212177 - 6212141
Alignment:
| Q |
28 |
tttatacatgaaagtaacaattgttttaatttttaaa |
64 |
Q |
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| T |
6212177 |
tttatacatgaaaataacaattgttttcatttttaaa |
6212141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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