View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13423_high_12 (Length: 327)
Name: NF13423_high_12
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13423_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 45701905 - 45701579
Alignment:
| Q |
1 |
actcatgaacaaagctttcctcgtttgannnnnnnatgttttctttgagataatcgttgtaacactttgaacaaaggttattttttgaaggagaaccata |
100 |
Q |
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| T |
45701905 |
actcatgaacaaagctttcctcgtttgattttttgatgttttctttgagataatcgttgtaacactttgaacaaaggttattttttgaaggagaaccata |
45701806 |
T |
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| Q |
101 |
aaagccgcaaccattgagacagagtgttggaaccatgttgtttcacttaatttttgactaaagaaaaaagtgaaatagatctttgaaggtaatcgcaaac |
200 |
Q |
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| T |
45701805 |
aaagccgcaaccattgagacagagtgttggaaccatgttgtttcacttaatttttgactaaagaaaaaagtgaaatagatctttgaaggtaatcgcaaac |
45701706 |
T |
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| Q |
201 |
ttacactatgtttggtttaatgattgaataggttgtgttattttataagggtaaccgtaagatctagaatgtactcaataataattataccgtattcacg |
300 |
Q |
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| T |
45701705 |
ttacactatgtttggtttgatgattgaataggttgtgttattttataagggtaaccgtaagatctagaatgttctcaataataattataccgtattcacg |
45701606 |
T |
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| Q |
301 |
ctgtcaaaataattaggaaattaatcc |
327 |
Q |
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| T |
45701605 |
ctgtcaaaataattaggaaattaatcc |
45701579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 168
Target Start/End: Complemental strand, 47440318 - 47440187
Alignment:
| Q |
36 |
atgttttctttgagataatcgttgtaacactttgaacaaaggttattttttgaaggagaaccataaaagccgcaaccattgagacagagtgttggaacca |
135 |
Q |
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| T |
47440318 |
atgttttctttgagataaacattgtaacactttgaacaaaggttcttgtttgaaggaagaccatagtaaccacaaccattggcacaaagtgatggaacca |
47440219 |
T |
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| Q |
136 |
tgttgtttcacttaatttttgactaaagaaaaa |
168 |
Q |
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| T |
47440218 |
tgttgtttcactt-agttttgactgaagaaaaa |
47440187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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