View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13423_high_15 (Length: 292)
Name: NF13423_high_15
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13423_high_15 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 22119250 - 22119507
Alignment:
| Q |
18 |
gcatcaagatgagtagaaagtgaaatctcagaaagtccctcaactttattcaaactgtcaatcacagtccgaacatttctgtctcggatgccaatgagaa |
117 |
Q |
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| T |
22119250 |
gcatcaagatgagtagaaagtgaaatctcagaaagtccctcaactttattcaaactgtcaatcacagtccgaacatttctgtcttggatgccaatgagaa |
22119349 |
T |
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| Q |
118 |
ccgcattggccaagagctcaacatccacatcggaatcaagctcgccgtgtaggacagtttcaaattctttgagaatgagcagggtttgaagaagggaagt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
22119350 |
ccgcattggccaagagctcaacatccacatcggaatcaagctcgccgtgtaggacagtttcaaattctttgagaatgagaggggtttgaagaagggaagt |
22119449 |
T |
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| Q |
218 |
agaattgttccgtggagagaggtttggaagagaggatttgtgggatttgattgtggtg |
275 |
Q |
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| T |
22119450 |
agaattgttccgtggagagaggtttggaagagaggatttgtgggatttgattatggtg |
22119507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 40492153 - 40492410
Alignment:
| Q |
18 |
gcatcaagatgagtagaaagtgaaatctcagaaagtccctcaactttattcaaactgtcaatcacagtccgaacatttctgtctcggatgccaatgagaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40492153 |
gcatcaagatgagtagaaagtgaaatctcagaaagtccctcaactttattcaaactgtcaatcacagtccgaacatttctgtcttggatgccaatgagaa |
40492252 |
T |
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| Q |
118 |
ccgcattggccaagagctcaacatccacatcggaatcaagctcgccgtgtaggacagtttcaaattctttgagaatgagcagggtttgaagaagggaagt |
217 |
Q |
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| T |
40492253 |
ccgcattggccaagagctcaacatccacatcggaatcaagctcgccgtgtaggacagtttcaaattctttgagaatgagaggggtttgaagaagggaagt |
40492352 |
T |
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| Q |
218 |
agaattgttccgtggagagaggtttggaagagaggatttgtgggatttgattgtggtg |
275 |
Q |
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| T |
40492353 |
agaattgttccgtggagagaggtttggaagagaggatttgtgggatttgattatggtg |
40492410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 22118964 - 22118921
Alignment:
| Q |
119 |
cgcattggccaagagctcaacatccacatcggaatcaagctcgc |
162 |
Q |
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| T |
22118964 |
cgcattggccaagagctcaacatccacatcggaatcaagctcgc |
22118921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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