View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13423_high_9 (Length: 333)
Name: NF13423_high_9
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13423_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-175
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 48012010 - 48011697
Alignment:
| Q |
1 |
tgtgagtcaggttggactctataccttgaacattcttatgaagacactagattcataggtggaactgaagggtactatggaaaccaacacaaagacaaaa |
100 |
Q |
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| T |
48012010 |
tgtgagtcaggttggactctataccttgaacattcttatgaagacactagattcataggtggaactgaagggtactatggaaaccaacacaaagacaaaa |
48011911 |
T |
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| Q |
101 |
gagtcacaaatgagtattctgaagaaggggtggaagatttgtctatggtttctgatgcttcttctggtcctccacatcttccatatgatgacgatgttta |
200 |
Q |
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| T |
48011910 |
gagtcacaaatgagtattctgaagaaggggtggaagatttgtctatggtttctgatgcttcttctggtcctccacatcttccatatgatgacgatgttta |
48011811 |
T |
|
| Q |
201 |
cttcaatgagaaagacaatgtagtgaaaaaacacaagaaaggtacaaagaaacagatagttagagaaaataaacaacatgctattgctgttgaagatcaa |
300 |
Q |
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| T |
48011810 |
cttcaatgagaaagacaatgtagtgaaaaaacacaagaaaggtacaaagaaacagaaagttagagaaaataaacaacatgctattgctgttgaagatcaa |
48011711 |
T |
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| Q |
301 |
caacaccttccttc |
314 |
Q |
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| T |
48011710 |
caacaccttccttc |
48011697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 336498 - 336535
Alignment:
| Q |
139 |
ttgtctatggtttctgatgcttcttctggtcctccaca |
176 |
Q |
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| T |
336498 |
ttgtccatggtttctgatgcttcttctggtcctccaca |
336535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 47592039 - 47592082
Alignment:
| Q |
133 |
gaagatttgtctatggtttctgatgcttcttctggtcctccaca |
176 |
Q |
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| T |
47592039 |
gaagatttatccatggtttctgatgcttcttctggacctccaca |
47592082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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