View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13423_low_1 (Length: 599)

Name: NF13423_low_1
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13423_low_1
NF13423_low_1
[»] chr1 (7 HSPs)
chr1 (16-582)||(50072766-50073333)
chr1 (16-147)||(28351328-28351459)
chr1 (25-148)||(4646464-4646587)
chr1 (16-148)||(23635128-23635260)
chr1 (48-148)||(23713797-23713897)
chr1 (62-112)||(37192369-37192419)
chr1 (80-112)||(6478185-6478217)
[»] chr5 (7 HSPs)
chr5 (16-140)||(18148152-18148276)
chr5 (62-148)||(27166358-27166444)
chr5 (62-112)||(26072541-26072591)
chr5 (62-112)||(32228452-32228502)
chr5 (73-112)||(18090204-18090243)
chr5 (62-112)||(18359532-18359582)
chr5 (62-112)||(33169306-33169356)
[»] chr3 (7 HSPs)
chr3 (16-137)||(20532452-20532573)
chr3 (38-140)||(16984080-16984181)
chr3 (62-118)||(15312230-15312286)
chr3 (64-112)||(17098318-17098366)
chr3 (62-112)||(963605-963655)
chr3 (62-112)||(50651790-50651840)
chr3 (64-112)||(11203469-11203517)
[»] chr2 (7 HSPs)
chr2 (26-113)||(44472970-44473057)
chr2 (62-132)||(15917301-15917371)
chr2 (62-112)||(42563113-42563163)
chr2 (62-112)||(40176318-40176368)
chr2 (39-112)||(15391768-15391841)
chr2 (62-110)||(3400632-3400680)
chr2 (64-112)||(33516226-33516274)
[»] chr6 (5 HSPs)
chr6 (63-148)||(12429038-12429123)
chr6 (16-148)||(33185038-33185170)
chr6 (72-112)||(17330629-17330669)
chr6 (62-112)||(13937348-13937398)
chr6 (62-112)||(20883472-20883522)
[»] chr8 (6 HSPs)
chr8 (38-147)||(45439279-45439388)
chr8 (62-112)||(25090035-25090085)
chr8 (62-112)||(34137405-34137455)
chr8 (64-112)||(12257893-12257941)
chr8 (64-112)||(12265285-12265333)
chr8 (64-112)||(17699132-17699180)
[»] scaffold0161 (1 HSPs)
scaffold0161 (62-112)||(6451-6501)
[»] chr4 (4 HSPs)
chr4 (62-133)||(19740461-19740532)
chr4 (62-147)||(48242027-48242111)
chr4 (62-112)||(5148309-5148359)
chr4 (62-112)||(36223531-36223581)
[»] chr7 (3 HSPs)
chr7 (62-112)||(48394552-48394602)
chr7 (62-112)||(37254406-37254456)
chr7 (64-109)||(18530160-18530205)


Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 16 - 582
Target Start/End: Complemental strand, 50073333 - 50072766
Alignment:
Q  16 ataagtgagttcgaccatcacgaatgagtgccgaaaacaaaggtagcattactagttttcaacgaccacaatgaatatgattttactttatctaacagat 115  Q
    ||||||| | ||||||| ||||||||||||| ||||| ||||||||| ||||| | ||||||||||||| ||||||||||||||||||||||||| ||||    
T  50073333 ataagtgggctcgaccaccacgaatgagtgctgaaaataaaggtagcgttactggctttcaacgaccacgatgaatatgattttactttatctaatagat 50073234  T
Q  116 atgagatagagctttgtt-ggttcttgaataaccagttggcttgttnnnnnnn-tatatacaatttgnnnnnnnaatttggctcccgcttaaaatttatg 213  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||        ||||||||||| |       ||||||||||||||||||||||| ||    
T  50073233 atgagatagagctttgtttggttcttgaataacctgttggcttgttaaaaaaaatatatacaattcgtttttttaatttggctcccgcttaaaatttttg 50073134  T
Q  214 ttaacttcttcgccgttggagtcaagagtttaatctccgactgcaatagaaaaaactaacgatactaattgtttgtttgaaaaagcttagtttcaaggtg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50073133 ttaacttcttcgccgttggagtcaagagtttaatctccgactgcaatagaaaaaactaacgatactaattgtttgtttgaaaaagcttagtttcaaggtg 50073034  T
Q  314 acattgaacacgttagcttaaaactccaatgattagctttgcaaagatcaacgtgaaccttgggatgcaagaaaaagtcaatcatcgtgcatcaataata 413  Q
    ||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||   ||||    
T  50073033 acattgaacacgttagcttaaaactccaatgtttagctttgcaaaattcaacgtgaaccttgggatgcaagaaaaagtcaatcat-gtgcatc---aata 50072938  T
Q  414 catattctcta---aatattagagaaaatttgatcataaaaaattgattatctgatcaaatcaactttttaaatttttaaggttggaaagaatacagctt 510  Q
    |||||||||||   |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50072937 catattctctaaataatagtagagaaaatttgatcataaaaaattgataatctgatcaaatcaacttttttaatttttaaggttggaaagaatacagctt 50072838  T
Q  511 ttgtaaagtcacattagatgggaggcgtgattatacaaaacaaataaaagtgaattcaaacatctagatttt 582  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||    
T  50072837 ttgtaaagtcacattagatgggaggcgtgattatacaaaactaataaaagtgaattcaaacatctacatttt 50072766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 28351328 - 28351459
Alignment:
Q  16 ataagtgagttcgaccatcacgaatgagtgccgaaaacaaaggtagcattactagttttcaacgaccacaatgaatatgattttactttatctaacagat 115  Q
    ||||||| | ||||||| ||| || |||| | ||||| ||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| ||    
T  28351328 ataagtgggctcgaccaccacaaacgagtactgaaaataaaggtagcgttactagctttcaaccaccacaatgaatatgattttactttatctaacaaat 28351427  T
Q  116 atgagatagagctttgttggttcttgaataac 147  Q
     ||  |||||||||||||| ||||||||||||    
T  28351428 gtggaatagagctttgttgcttcttgaataac 28351459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 4646587 - 4646464
Alignment:
Q  25 ttcgaccatcacgaatgagtgccgaaaacaaaggtagcattactagttttcaacgaccacaatgaatatgattttactttatctaacagatatgagatag 124  Q
    |||||| | ||||||||||| || | |  ||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||| |   ||||    
T  4646587 ttcgacaaccacgaatgagtaccaagactaaaggtagcattactagctttcaaccaccacaaagaatatgattttactttatctaacagatgtagtatag 4646488  T
Q  125 agctttgttggttcttgaataacc 148  Q
    |||||||||| ||| | |||||||    
T  4646487 agctttgttgattcctaaataacc 4646464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 23635260 - 23635128
Alignment:
Q  16 ataagtgagttcgaccatcacgaatgagtgccgaaaacaaaggtagcattactagttttcaacgaccacaatgaatatgattttactttatctaacagat 115  Q
    ||||||| ||||||||| ||| |||||||   ||||| ||||||||  ||||| | ||||||| ||||||  ||||||||||||||||||||||||| |     
T  23635260 ataagtgggttcgaccaccacaaatgagtattgaaaataaaggtagtgttactcgctttcaaccaccacagagaatatgattttactttatctaacatac 23635161  T
Q  116 atgagatagagctttgttggttcttgaataacc 148  Q
     ||  || | | |||||||||||||||||||||    
T  23635160 gtggaatggtggtttgttggttcttgaataacc 23635128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 148
Target Start/End: Complemental strand, 23713897 - 23713797
Alignment:
Q  48 gaaaacaaaggtagcattactagttttcaacgaccacaatgaatatgattttactttatctaacagatatgagatagagctttgttggttcttgaataac 147  Q
    ||||| ||||||||  ||||| | ||||||| |||| |  ||||||||||||||||||||||||| |  ||  |||| | ||||||| ||||||||||||    
T  23713897 gaaaataaaggtagtgttactcgctttcaaccaccatagagaatatgattttactttatctaacatacgtggaatagtggtttgttgattcttgaataac 23713798  T
Q  148 c 148  Q
    |    
T  23713797 c 23713797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 37192419 - 37192369
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||||| ||||||| | || ||||||||||||||||||||    
T  37192419 cattactagctttcaaccaccacaaggtatgtgattttactttatctaaca 37192369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 80 - 112
Target Start/End: Original strand, 6478185 - 6478217
Alignment:
Q  80 accacaatgaatatgattttactttatctaaca 112  Q
    ||||||| |||||||||||||||||||||||||    
T  6478185 accacaaggaatatgattttactttatctaaca 6478217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 18148276 - 18148152
Alignment:
Q  16 ataagtgagttcgaccatcacgaatgagtgccgaaaacaaaggtagcattactagttttcaacgaccacaatgaatatgattttactttatctaacagat 115  Q
    ||||||||| | ||||| ||| ||||||| ||||||||||||||||| ||||||| ||||||| ||||||| || |||||||||||||||||||||| ||    
T  18148276 ataagtgagcttgaccaccacaaatgagtaccgaaaacaaaggtagcgttactagctttcaaccaccacaaagagtatgattttactttatctaacatat 18148177  T
Q  116 atgagatagagctttgttggttctt 140  Q
     ||  ||||||||||||||||||||    
T  18148176 gtggaatagagctttgttggttctt 18148152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 27166444 - 27166358
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaacagatatgagatagagctttgttggttcttgaataacc 148  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||||||||||| || ||  |||||||||||||||||| | |||||||    
T  27166444 cattactagctttcaaccaccacaaagaatatgattttactttatctaacatatgtggtatagagctttgttggttcctaaataacc 27166358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 26072541 - 26072591
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||||| ||||||| ||||| |||||||||||||||||||    
T  26072541 cattactagctttcaaccaccacaaggaataagattttactttatctaaca 26072591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 32228452 - 32228502
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||||| |||||||  ||||||||||||||||||||||||    
T  32228452 cattactagctttcaaccaccacaaaaaatatgattttactttatctaaca 32228502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 18090243 - 18090204
Alignment:
Q  73 ttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    |||||| ||||||||||||| |||||||||||||||||||    
T  18090243 ttcaaccaccacaatgaataggattttactttatctaaca 18090204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 18359582 - 18359532
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||||| ||||||| | || ||||||||||||||||||||    
T  18359582 cattactagctttcaaccaccacaaagtatgtgattttactttatctaaca 18359532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 33169306 - 33169356
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||| | ||||||| ||| |||||||||||||||||||||    
T  33169306 cattactagctttcatccaccacaaggaacatgattttactttatctaaca 33169356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 20532573 - 20532452
Alignment:
Q  16 ataagtgagttcgaccatcacgaatgagtgccgaaaacaaaggtagcattactagttttcaacgaccacaatgaatatgattttactttatctaacagat 115  Q
    ||||||| | ||||||| ||| ||||||||||||||||||||| ||  ||||| | ||||| | ||||||| || ||||| |||||||||||||||||||    
T  20532573 ataagtgggctcgaccaccacaaatgagtgccgaaaacaaaggcagtcttactggctttcagccaccacaaagagtatgactttactttatctaacagat 20532474  T
Q  116 atgagatagagctttgttggtt 137  Q
      | ||||||||||||||||||    
T  20532473 gcgtgatagagctttgttggtt 20532452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 38 - 140
Target Start/End: Original strand, 16984080 - 16984181
Alignment:
Q  38 aatgagtgccgaaaacaaaggtagcattactagttttcaacgaccacaatgaatatgattttactttatctaacagatatgagatagagctttgttggtt 137  Q
    ||||||| |||| |||||||||||||||||||| ||||||| ||||||| || ||||| |||| |||||||||||||  ||  ||| |||||||||||||    
T  16984080 aatgagtaccgagaacaaaggtagcattactagctttcaaccaccacaaagagtatga-tttattttatctaacagaagtggaataaagctttgttggtt 16984178  T
Q  138 ctt 140  Q
    |||    
T  16984179 ctt 16984181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 15312230 - 15312286
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaacagatatg 118  Q
    ||||||||| ||||||| ||||||| ||||||||||||| ||||||||||| |||||    
T  15312230 cattactagctttcaaccaccacaaggaatatgattttagtttatctaacatatatg 15312286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 17098366 - 17098318
Alignment:
Q  64 ttactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||| ||||||| ||||||| |||||||||||||||| ||||||||    
T  17098366 ttactagatttcaaccaccacaaggaatatgattttacttcatctaaca 17098318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 963655 - 963605
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||| | ||||||| ||| |||||||||||||||||||||    
T  963655 cattactagctttcatccaccacaaggaacatgattttactttatctaaca 963605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 50651840 - 50651790
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||||| ||||||| ||||| |||||||||||| ||||||    
T  50651840 cattactagctttcaaccaccacaaggaataagattttactttacctaaca 50651790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 11203469 - 11203517
Alignment:
Q  64 ttactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||| ||||||| ||||||| | || ||||||||||||||||||||    
T  11203469 ttactagctttcaaccaccacaaggtatttgattttactttatctaaca 11203517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 26 - 113
Target Start/End: Original strand, 44472970 - 44473057
Alignment:
Q  26 tcgaccatcacgaatgagtgccgaaaacaaaggtagcattactagttttcaacgaccacaatgaatatgattttactttatctaacag 113  Q
    ||||||| ||||||||||| || |||  ||||||||||||| ||| ||||||| ||||||| ||||||||||||||||||||||||||    
T  44472970 tcgaccaccacgaatgagtaccaaaactaaaggtagcattattagctttcaaccaccacaaagaatatgattttactttatctaacag 44473057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 15917301 - 15917371
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaacagatatgagatagagctttgt 132  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||||||||||| || ||  ||||||||||||    
T  15917301 cattactagctttcaaccaccacaaagaatatgattttactttatctaacatatgtggtatagagctttgt 15917371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 42563113 - 42563163
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||||| ||||||| ||||||||||||||||||| |||||    
T  42563113 cattactagctttcaaccaccacaaggaatatgattttactttatttaaca 42563163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 40176318 - 40176368
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||||| ||||||  |||| ||||||||||||||||||||    
T  40176318 cattactagctttcaaccaccacatggaatttgattttactttatctaaca 40176368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 112
Target Start/End: Original strand, 15391768 - 15391841
Alignment:
Q  39 atgagtgccgaaaacaaaggtagcattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    |||||| ||||||  ||||  ||| ||||||| ||||||| ||||||| ||||| ||||| |||||||||||||    
T  15391768 atgagtaccgaaactaaagtcagctttactagctttcaaccaccacaaggaataagatttaactttatctaaca 15391841  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 3400632 - 3400680
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaa 110  Q
    ||||| ||| ||||||| ||||||| | |||||||||||||||||||||    
T  3400632 cattaatagctttcaaccaccacaaggtatatgattttactttatctaa 3400680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 33516274 - 33516226
Alignment:
Q  64 ttactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||| ||||||| ||||||  |||| ||||||||||||||||||||    
T  33516274 ttactagctttcaaccaccacatggaatttgattttactttatctaaca 33516226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 63 - 148
Target Start/End: Complemental strand, 12429123 - 12429038
Alignment:
Q  63 attactagttttcaacgaccacaatgaatatgattttactttatctaacagatatgagatagagctttgttggttcttgaataacc 148  Q
    |||||||| ||||||| ||||||| ||||||||||||||||||||||||| || ||  |||||||||||||||||| | |||||||    
T  12429123 attactagctttcaactaccacaaagaatatgattttactttatctaacatatgtggtatagagctttgttggttcctaaataacc 12429038  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 33185038 - 33185170
Alignment:
Q  16 ataagtgagttcgaccatcacgaatgagtgccgaaaacaaaggtagcattactagttttcaacgaccacaatgaatatgattttactttatctaacagat 115  Q
    ||||||| | ||||||| ||  ||||||| | |||| |||| ||||||||||||| ||||||| ||||||| | |||||| || ||||||||||||||||    
T  33185038 ataagtgggctcgaccaccaaaaatgagtactgaaagcaaatgtagcattactagctttcaaccaccacaaagcatatgaattcactttatctaacagat 33185137  T
Q  116 -atgagatagagctttgttggttcttgaataacc 148  Q
      ||| || ||||||||||||||||| |||||||    
T  33185138 gctga-atggagctttgttggttcttaaataacc 33185170  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 17330629 - 17330669
Alignment:
Q  72 tttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  17330629 tttcaaccaccacaaagaatatgattttactttatctaaca 17330669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 13937348 - 13937398
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||| | ||||||| ||| |||||||||||||||||||||    
T  13937348 cattactagctttcatccaccacaaggaacatgattttactttatctaaca 13937398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 20883522 - 20883472
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||||| ||||||| | || ||||||||||||||||||||    
T  20883522 cattactagctttcaaccaccacaaggtatgtgattttactttatctaaca 20883472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 38 - 147
Target Start/End: Complemental strand, 45439388 - 45439279
Alignment:
Q  38 aatgagtgccgaaaacaaaggtagcattactagttttcaacgaccacaatgaatatgattttactttatctaacagatatgagatagagctttgttggtt 137  Q
    ||||||| || |||||||||||||| ||||||  ||||||| ||||||| |  ||| |||||||||||| ||||| || ||| || ||||||||||||||    
T  45439388 aatgagtaccaaaaacaaaggtagctttactaactttcaaccaccacaaagcgtataattttactttatataacaaatgtgaaattgagctttgttggtt 45439289  T
Q  138 cttgaataac 147  Q
    ||| ||||||    
T  45439288 cttaaataac 45439279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 25090035 - 25090085
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||| | ||||||| |||| ||||||||||||||||||||    
T  25090035 cattactagctttcagccaccacaaggaatttgattttactttatctaaca 25090085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 34137455 - 34137405
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||| ||| ||||||||||| ||||||||||||| |||||||    
T  34137455 cattactagcttttaaccaccacaatgaagatgattttactttgtctaaca 34137405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 12257941 - 12257893
Alignment:
Q  64 ttactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||| ||||||| ||||||   ||||||||||||||||||||||||    
T  12257941 ttactagctttcaaccaccacatgtaatatgattttactttatctaaca 12257893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 12265333 - 12265285
Alignment:
Q  64 ttactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||| ||||||| ||||||   ||||||||||||||||||||||||    
T  12265333 ttactagctttcaaccaccacatgtaatatgattttactttatctaaca 12265285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 17699132 - 17699180
Alignment:
Q  64 ttactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||| ||||||||| ||||||| | || ||||||||||||||||||||    
T  17699132 ttactggttttcaaccaccacaaggtatttgattttactttatctaaca 17699180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 6501 - 6451
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||||| ||||||||||||| |||||||||||||||||||    
T  6501 cattactagctttcaaccaccacaatgaataagattttactttatctaaca 6451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 133
Target Start/End: Complemental strand, 19740532 - 19740461
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaacagatatgagatagagctttgtt 133  Q
    ||||||||| ||||| | ||||||| ||||||||||||||||||||||||| ||  || | |||||||||||    
T  19740532 cattactagctttcagccaccacaaggaatatgattttactttatctaacatatgcgatagagagctttgtt 19740461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 48242027 - 48242111
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaacagatatgagatagagctttgttggttcttgaataac 147  Q
    ||||||||  ||||||| | ||||| ||||||||||||||||||||||||| || || |  ||||||||||| |||||| ||||||    
T  48242027 cattactaactttcaaccaacacaaggaatatgattttactttatctaacatatgtg-gtgagagctttgtttgttcttaaataac 48242111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 5148309 - 5148359
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||||| ||||||| | || ||||||||||||||||||||    
T  5148309 cattactagctttcaaccaccacaaggtatgtgattttactttatctaaca 5148359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 36223581 - 36223531
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||| | | ||||| |||||||||||||||||||||||||    
T  36223581 cattactagctttcagctatcacaaggaatatgattttactttatctaaca 36223531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 48394552 - 48394602
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||||| ||||||| ||||||||||||| |||||||||||    
T  48394552 cattactagctttcaaccaccacaaggaatatgattttattttatctaaca 48394602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 37254406 - 37254456
Alignment:
Q  62 cattactagttttcaacgaccacaatgaatatgattttactttatctaaca 112  Q
    ||||||||| ||||||| ||||||| | || ||||||||||||||||||||    
T  37254406 cattactagctttcaaccaccacaaggtatgtgattttactttatctaaca 37254456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 64 - 109
Target Start/End: Original strand, 18530160 - 18530205
Alignment:
Q  64 ttactagttttcaacgaccacaatgaatatgattttactttatcta 109  Q
    ||||||||||||||| ||||||| | || |||||||||||||||||    
T  18530160 ttactagttttcaaccaccacaaggtatgtgattttactttatcta 18530205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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