View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13423_low_11 (Length: 332)
Name: NF13423_low_11
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13423_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 5 - 316
Target Start/End: Complemental strand, 3959022 - 3958715
Alignment:
| Q |
5 |
gtgaaaagaaagatttgataaacattcttttggaaatgaatgacgaagcaggtgaaaaattggaggataaagacattattgacttactgatagcacttct |
104 |
Q |
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| T |
3959022 |
gtgaaaagaaagatttgataaacattcttttggaaatgaatgacgaagcaggtgaaaaattggaggacaaagacattattgacttactgataacacttct |
3958923 |
T |
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| Q |
105 |
atttggtggtcacgattcaattgcagctggtatgatgttgacaattatgtatcttacagagcatccactttgtttgaagaaagccaaggtaaattaccta |
204 |
Q |
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| T |
3958922 |
atttggtggtcacgattcaattgcagctggtatgatgttgacaattatgtatcttacagagcatccactttgtttgaagaaagccaaggtaaattaccta |
3958823 |
T |
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| Q |
205 |
gaatttgttactttcaaatagatcactattcactagtaatggttttatttacgatcatattatctaagttagtactggacataaaaatggtagtcaagca |
304 |
Q |
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| T |
3958822 |
gaattttttactttcaaatagatcactattc----gtaatggttttatttacgatcatattatctaagttagtactggacataaaaatggtagtcaaata |
3958727 |
T |
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| Q |
305 |
ttctttttcttt |
316 |
Q |
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| T |
3958726 |
ttctttttcttt |
3958715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 195
Target Start/End: Complemental strand, 129982 - 129804
Alignment:
| Q |
17 |
atttgataaacattcttttggaaatgaatgacgaagcaggtgaaaaattggaggataaagacattattgacttactgatagcacttctatttggtggtca |
116 |
Q |
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| T |
129982 |
atttgttagacattattttggaaaccaaagacgaaaggggtgaaaaattggaggataaggacattattgacttactgatagcctttctatttggtgctca |
129883 |
T |
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| Q |
117 |
cgattcaattgcagctggtatgatgttgacaattatgtatcttacagagcatccactttgtttgaagaaagccaaggta |
195 |
Q |
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| T |
129882 |
tgattcaattgcaactgcttctatgtggtcagttatgtatcttgcacaaaatccactttgtttgaagaaagccaaggta |
129804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 10306139 - 10306356
Alignment:
| Q |
7 |
gaaaagaaagatttgataaacattcttttggaaatgaatgacgaagcaggtgaaaaattggaggataaagacattattgacttactgatagcacttctat |
106 |
Q |
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| T |
10306139 |
gaaaataatgatttgttagacaatcttttggaaatcaatgacgaaaggggtgaaaaatttgaagataaggatattgttgatttactcgtagcgttcctat |
10306238 |
T |
|
| Q |
107 |
ttggtggtcacgattcaattgcagctggtatgatgttgacaattatgtatcttacagagcatccactttgtttgaagaaagccaaggtaaattacctaga |
206 |
Q |
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| T |
10306239 |
ttggtgctcatgatgcaattgcaactgctgttatgtggtcagttataaatcttacacaaaatccactttgtttgaagaaagccaaggtaaattcactata |
10306338 |
T |
|
| Q |
207 |
atttgttactttcaaata |
224 |
Q |
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| T |
10306339 |
atttgttacttttaaata |
10306356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 203
Target Start/End: Complemental strand, 149809 - 149622
Alignment:
| Q |
16 |
gatttgataaacattcttttggaaatgaatgacgaagcaggtgaaaaattggaggataaagacattattgacttactgatagcacttctatttggtggtc |
115 |
Q |
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|||||| || ||||| ||||| |||| || |||||| ||||||||||| |||||||| ||||||||||||||||||||| | |||||||||||| || |
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| T |
149809 |
gatttgttagacattattttgcaaatcaaagacgaaagtggtgaaaaatttgaggataaggacattattgacttactgataacgtttctatttggtgctc |
149710 |
T |
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| Q |
116 |
acgattcaattgcagctggtatgatgttgacaattatgtatcttacagagcatccactttgtttgaagaaagccaaggtaaattacct |
203 |
Q |
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| T |
149709 |
atgaaacaatcgcaactaccattatgtggtcagttatgtatcttacacaaaatccactttgtttgaagaaagctaaggtaaatcacct |
149622 |
T |
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