View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13423_low_12 (Length: 332)
Name: NF13423_low_12
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13423_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 13 - 261
Target Start/End: Original strand, 18558346 - 18558592
Alignment:
| Q |
13 |
aatattgatacggtattattctttgtatttccaatttctgaattaattgttggattttgaaatgtgaatactaataaataagtcttgaatatgttgaaat |
112 |
Q |
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| T |
18558346 |
aatattgatacggtattattctttgtatttccaatttctgaattaattgttggattttgaaatgtgaatactaataaataagtcttgaat--gttgaaat |
18558443 |
T |
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| Q |
113 |
gtagaggattcaattgcatagaaagagtggaaaaaagagttttatgtttgctattgtactacctattgcctctgattccaggttttttcccaactcttct |
212 |
Q |
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| T |
18558444 |
gtagaggattcaattgcatagaaagagtggaaaaaagagttttatgtttgctattgcactacctattgcctctgattccaggttttttctcaactcttct |
18558543 |
T |
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| Q |
213 |
atttattttataacctataaccactcaaatcattattaacttgtctaac |
261 |
Q |
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| T |
18558544 |
atttattttataacctataaccactcaaatctgtattaacttgtctaac |
18558592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 18558613 - 18558650
Alignment:
| Q |
279 |
accttgatgatgaatattaaatccgtgaatcaatggtt |
316 |
Q |
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| T |
18558613 |
accttgatgatgaatattaaatccgtgaatcaatggtt |
18558650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 149
Target Start/End: Original strand, 33137631 - 33137679
Alignment:
| Q |
101 |
atatgttgaaatgtagaggattcaattgcatagaaagagtggaaaaaag |
149 |
Q |
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| T |
33137631 |
atatgttgaaatgcagagctttcaattgcacagaaagagtggacaaaag |
33137679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 149
Target Start/End: Complemental strand, 35203248 - 35203208
Alignment:
| Q |
109 |
aaatgtagaggattcaattgcatagaaagagtggaaaaaag |
149 |
Q |
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| T |
35203248 |
aaatgcagagcattcaattggatagaaagagtggaaaaaag |
35203208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 35222864 - 35222816
Alignment:
| Q |
101 |
atatgttgaaatgtagaggattcaattgcatagaaagagtggaaaaaag |
149 |
Q |
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| T |
35222864 |
atatgttgaaattaagagcgttcaattggatagaaagagtggaaaaaag |
35222816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 35249682 - 35249638
Alignment:
| Q |
102 |
tatgttgaaatgtagaggattcaattgcatagaaagagtggaaaa |
146 |
Q |
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| T |
35249682 |
tatgttgaaatgtagagctttcaattggataaaaagagtggaaaa |
35249638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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