View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13423_low_17 (Length: 282)
Name: NF13423_low_17
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13423_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 279
Target Start/End: Complemental strand, 33236022 - 33235763
Alignment:
| Q |
20 |
aatagaacaagcatttggattttcatcactgaacatttcaacatagctatcatcaaaggtggactcttttatgttggaagtgtcaccaacctttctaacc |
119 |
Q |
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| T |
33236022 |
aatagaacaagcatttggattttcatcactgaacatttcaacatagctatcatcaaaggtggactcttttatgttggaagtgtcgccaacctttctaacc |
33235923 |
T |
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| Q |
120 |
atattaggaggtgctttcttatcataggcttgtgaaatataaggatgagccaccatagtgtatggaacataaggccaaagctcaaccttcttctttgtag |
219 |
Q |
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| T |
33235922 |
atattaggaggtgctttcttatcataggcttgtgaaatataaggatgagccaccatagtgtatggaacataaggccaaagctcaaccttcttctttgtag |
33235823 |
T |
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| Q |
220 |
attgagcagctttcaacactttctttggttcaacatatccactcactgttactctctgct |
279 |
Q |
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| T |
33235822 |
attgagcagctttcaacactttctttggttcaacatatccactcaccgttactttctgct |
33235763 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 40576998 - 40577034
Alignment:
| Q |
21 |
atagaacaagcatttggattttcatcactgaacattt |
57 |
Q |
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| T |
40576998 |
atagaacaagcatttggattttcatcactgaaaattt |
40577034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 10652926 - 10652856
Alignment:
| Q |
128 |
aggtgctttcttatcataggcttgtgaaatataaggatgagccaccatagtgtatggaacataaggccaaa |
198 |
Q |
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| T |
10652926 |
aggtgctttcttgtcataagcttgagatatataaggataagccaccaagttgtatggaatatatggccaaa |
10652856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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