View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13423_low_2 (Length: 596)
Name: NF13423_low_2
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13423_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 18 - 587
Target Start/End: Complemental strand, 34616421 - 34615852
Alignment:
| Q |
18 |
acatatacacttgcaaaaacagcttctttttggttttgaagagtttattgctggcatagcatgttgatgcagcattggaggaggcacatggataaccttt |
117 |
Q |
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| T |
34616421 |
acatatacacttgcaaaaacagcttatttttggctttgaagagtttattgctggcatagcatgttgatgcagtattggaggaggcacatggataaccttt |
34616322 |
T |
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| Q |
118 |
tctgatctagaggaacctggaggtactaatggtgtcctagggtgtggttttgtttccacattcataggatggattctctgtctctgatgatctgacatga |
217 |
Q |
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| T |
34616321 |
tctgatctagaggaacctggaggtactaatggtgtcctagggtgtggttttgtttccacattcatagggtggattctctgtctctgatgatctgacatga |
34616222 |
T |
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| Q |
218 |
atactagttatttgcttagtagtgttctctcagatttttgtgataaaaaatggtaacacccttttgttgatgatttatgcagacattccttatttgaata |
317 |
Q |
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| T |
34616221 |
atactagttatttgcttagtagtgttctctcagatttttgtgataaaaaatggtaacacccttttgttgatgctttatgcagacattccttatttgaata |
34616122 |
T |
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| Q |
318 |
ctatttgtgaaaatactgttgggggtggattggttggttctgcaatatgtactgtggtgtgtggctaccttccttacctacaaactgtgtaaaacaccga |
417 |
Q |
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| T |
34616121 |
ctaattgtgaaaatactgttgggggtggattggttggttctgcaatatgtactgtggtgtgtggctaccttccttacctacaaactgtgtaaaacaccga |
34616022 |
T |
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| Q |
418 |
aaaaggtagtggtagttcagctaaatatgtatactgtgttgactttagacaagcttgggttccttaaaatatttttcttttgttgagtatgtatgacaga |
517 |
Q |
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| T |
34616021 |
aaaaggtagtggtagttcagctaaatatgtatactgtgttgactttagacaagcttgggttccttaaaatatttttcttttgttgagtatgtatgacaga |
34615922 |
T |
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| Q |
518 |
cacgattccttagctctaactaacccataagagtaacattatatgcacgtaacgtatcttcatctcactc |
587 |
Q |
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| T |
34615921 |
aacgattccttagctctaactaacccataacagtaacattatatgcacgtaacgtatcttcatatcactc |
34615852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 341 - 438
Target Start/End: Complemental strand, 2476269 - 2476172
Alignment:
| Q |
341 |
ggtggattggttggttctgcaatatgtactgtggtgtgtggctaccttccttacctacaaactgtgtaaaacaccgaaaaaggtagtggtagttcagc |
438 |
Q |
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| T |
2476269 |
ggtggattggttggttccacaagaggtactttggtatgtggttaccttccttacctacaaaccgtgtgtaaatctcaaaaagatagtggtagttcagc |
2476172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 2461955 - 2461904
Alignment:
| Q |
38 |
agcttctttttggttttgaagagtttattgctggcatagcatgttgatgcag |
89 |
Q |
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| T |
2461955 |
agcttctctttggttgtgaatagtttatttctggtatagcatgttgatgcag |
2461904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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