View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13423_low_21 (Length: 214)
Name: NF13423_low_21
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13423_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 193
Target Start/End: Original strand, 530999 - 531175
Alignment:
| Q |
16 |
tagcaaaggaaatggcgtctgggagctcaaaaagctgggtagcttaaagaaagtatagacctagagatctgtgcacgggaaaaccataaggaggagcctc |
115 |
Q |
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| T |
530999 |
tagcaaaggaaatgtgg-ctgggagctcaaaaacctgggtagcttaaagaaagtataaacatatagatccgtgcatgggaaaaccatgaggaagagcctc |
531097 |
T |
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| Q |
116 |
cttaaggagtgggctgttctaaattatcattcaatgctcctccatgagtgcaatgccagaagcactcgttttgcttat |
193 |
Q |
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| T |
531098 |
cttaaggagtgggctgttctaaattattattcaatgctcctcggggagtgcaatgccggaagcactcgttttgcttat |
531175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 517751 - 517924
Alignment:
| Q |
16 |
tagcaaaggaaatggcgtctgggagctcaaaaagctgggtagcttaaagaaagtatagacctagagatctgtgcacgggaaaaccataaggaggagcctc |
115 |
Q |
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|||||||||||||| ||||||||| ||||||| ||||||||||||| |||||||| |||| |||||| |||| || |||||||| |||| ||||||| |
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| T |
517751 |
tagcaaaggaaatgt-gtctgggagttcaaaaacctgggtagcttaa-gaaagtattgaccaggagatccatgcaaggaaaaaccatgaggaagagcctc |
517848 |
T |
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| Q |
116 |
cttaaggagtgggctgttctaaattatcattcaatgctcctccatgagtgcaatgccagaagcactcgttttgctt |
191 |
Q |
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| T |
517849 |
tttcagaagtgggctattctaaatttgtagtcaatgctcctccaagagtgcaatgcaagaagcactcattttgctt |
517924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 326373 - 326328
Alignment:
| Q |
148 |
aatgctcctccatgagtgcaatgccagaagcactcgttttgcttat |
193 |
Q |
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| T |
326373 |
aatgctcctccatgagtgcaatgccagaagcactcgttttgcttat |
326328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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