View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13423_low_3 (Length: 488)
Name: NF13423_low_3
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13423_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 11 - 447
Target Start/End: Complemental strand, 48276963 - 48276537
Alignment:
| Q |
11 |
atcatcagaatagtgtaaggagttggttcctttgagtttgagaattagcataaacataagaacaatcttctgttcttgttctacttccgaacgtggaaga |
110 |
Q |
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| T |
48276963 |
atcataagaatagtgtaaggagttggttcctttgagtttgagaattagcataaacataagaacaatcttctgttcttgttctacttcccaacgtggaaga |
48276864 |
T |
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| Q |
111 |
cgactccgattcctcggactcatcatgtgtccccgcacgttgcttttctgcttggtttttcagaactctagagtgtgacatcaacccagattggtgttgg |
210 |
Q |
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| T |
48276863 |
c---tccgattcctctgactcat---gtgtccccgcacgttgcttttctgcttggtttttcaccactctagagtatgacatcaacccagattgctgttgg |
48276770 |
T |
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| Q |
211 |
tgatattgatgatgaattgaactactatcatgatccaaacctaacaactgatgagggagtgcagtcaacgagccgccgttacctctcagcacttgttcaa |
310 |
Q |
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| T |
48276769 |
tgatattgatgatgaattgaactactatcatgatccacacctaacaactgatcagggagtgccgtcaacgcgccgccgttacctctcagcacttgttcaa |
48276670 |
T |
|
| Q |
311 |
caccaagttgacagaattgccactttccagtccataacagcccaactgctccatttactggatttatagttctcccaacagcttcatacataagcgactg |
410 |
Q |
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| T |
48276669 |
caccaagttgacagaattgccactttccagtccataacagcccaactgctccatttactggatttatagttctcccaacagcttcatacataagcgactg |
48276570 |
T |
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| Q |
411 |
gaacaaacctgtaatatatataattgaattaattaat |
447 |
Q |
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| T |
48276569 |
gaacaaacctgtaa----tataattgaattaattaat |
48276537 |
T |
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