View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13423_low_5 (Length: 385)
Name: NF13423_low_5
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13423_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 45408404 - 45408768
Alignment:
| Q |
17 |
acaaagatcttgttgatgaataatgtataagtattttgtgaacactattatttattgtgatattacaagtgtcaattaaagtttctcatttgatgaaaaa |
116 |
Q |
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| T |
45408404 |
acaaagatctcgttgatgagtaatgtataagtattttgtgaacactattatttactgtgatattacaagtgtcaattaaagtttctcatttgatgaaaaa |
45408503 |
T |
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| Q |
117 |
gttgaatttgagcaa-cattaaagtaagatgatctataaattcaatattcaaaagattttggtgaagatatatcttcaatctcacttatgtggttgttct |
215 |
Q |
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| T |
45408504 |
gttgaatttgagcaaacattaaagtaagatgatctataaattcaatattcaaaagattttggtgaagatatatatacaatctcacttgtgtggttgttct |
45408603 |
T |
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| Q |
216 |
taatttaatgaaatgatttaacctaatgagattctcgttcatatatccaacattatttaactcttaaagacgtattctaatatgatgaaccccataatct |
315 |
Q |
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| T |
45408604 |
taatttaatgaaatgatttaacataatgagattctcgttcatatatccaacattatttaactcctaaagacgtattctaatatgatgaaccccataatct |
45408703 |
T |
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| Q |
316 |
aaatcacctaataattttttatacaaaaatagttgcactcaatggaactagtaccctttgctact |
380 |
Q |
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| T |
45408704 |
aaatcacctaataattttttatacaaaaatagttgcactcagtagaactagtaccctttgttact |
45408768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 225
Target Start/End: Complemental strand, 11655342 - 11655308
Alignment:
| Q |
191 |
tcaatctcacttatgtggttgttcttaatttaatg |
225 |
Q |
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| T |
11655342 |
tcaatctcacttatgtggttgttcttaatctaatg |
11655308 |
T |
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