View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13423_low_6 (Length: 367)
Name: NF13423_low_6
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13423_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 352
Target Start/End: Complemental strand, 39100546 - 39100211
Alignment:
| Q |
20 |
cccctcttacaaccagtactattaggtttgattcgtggacataaatagtggatgatccgagaataaaaacctgatagcagatgatctaattgatattaaa |
119 |
Q |
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| T |
39100546 |
cccctctcacgaccagttctattgggtttgattcgtggacataaatagtgggtgacccgataataaaaacctgatagcagatgacccaatggatattgaa |
39100447 |
T |
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| Q |
120 |
gataccattttagaaatgatggtcagacctaacaaaatcccacaaaaccaactttttgagataagaattacctccacttatacatacacattgtcatgcc |
219 |
Q |
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| T |
39100446 |
gataccattttagaaatggtggtcggacctaacaaaatcccacaaaaccgattttttgaagtaaggattacctccacttgtacatacacattgtcatgtc |
39100347 |
T |
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| Q |
220 |
atcttctatccaat---ggactttcaagatattatgcatccatttaaattaaattaaattaaattgcctcgtattctccagaatttatccactatgtggt |
316 |
Q |
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| T |
39100346 |
atcttatatccgattcgagactttcaagacattatgcatccatttaaattaaattaaattaaattgcctcgtattctccagaatttatccactatgtggt |
39100247 |
T |
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| Q |
317 |
tttatcattccaatgcctctctgcaaaagctctgtg |
352 |
Q |
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| T |
39100246 |
tttatcattccaatgcctctctgcaaaagctctgtg |
39100211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 15124675 - 15124746
Alignment:
| Q |
28 |
acaaccagtactattaggtttgattcgtggacataaatagtggatgatccgagaataaaaacctgatagcag |
99 |
Q |
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| T |
15124675 |
acaaccagcactattggacttggttcgtggacataaatggtggatgacccgataacgaaaacctgatagcag |
15124746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 19954334 - 19954418
Alignment:
| Q |
18 |
cacccctcttacaaccagtactattaggtttgattcgtggacataaatagtggatgatccgagaataaaaacctgatagcagatg |
102 |
Q |
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|||||| || || |||||||||||| || ||| ||||||||||||||| |||| || || || | |||||||||||||||||| |
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| T |
19954334 |
cacccccctcacgaccagtactattgggcttggttcgtggacataaatggtgggtggtcagatagcgaaaacctgatagcagatg |
19954418 |
T |
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