View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13423_low_7 (Length: 365)
Name: NF13423_low_7
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13423_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 61 - 238
Target Start/End: Original strand, 113702 - 113879
Alignment:
| Q |
61 |
atttcaaattcatttcagatctaaatatcagttacactaaattcagagtaagagtacggtggattttaaattatcagttagaaaacaacatatgagagac |
160 |
Q |
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| T |
113702 |
atttcaaattcatttcagatctaaatatcagttacactaaattcagagtaagagtacggtggattttaaattatcagttagaaaacaacatatgagagac |
113801 |
T |
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| Q |
161 |
agaacagtttcaaagagggctaattctaaagcagaagtatcaccagcagaacagttggatttgaatttggaacaaccc |
238 |
Q |
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| T |
113802 |
agaacagtttcaaagagggctaattctaaagcagaagtatcaccagcagaacagttggatttgaatttggaacaaccc |
113879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 113666 - 113704
Alignment:
| Q |
1 |
aattcataaggttcactcacacatgaaattcaaacaatt |
39 |
Q |
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| T |
113666 |
aattcataaggttcactcacacatgaaattcaaacaatt |
113704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 113951 - 113988
Alignment:
| Q |
310 |
gattgagaaatctctcaatacctggtaaatggaacctt |
347 |
Q |
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| T |
113951 |
gattgagaaatctctcaatacctggtaaatggaacctt |
113988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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