View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13423_low_8 (Length: 363)

Name: NF13423_low_8
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13423_low_8
NF13423_low_8
[»] chr8 (14 HSPs)
chr8 (18-257)||(41722059-41722299)
chr8 (186-255)||(14999169-14999238)
chr8 (186-255)||(41403994-41404063)
chr8 (188-255)||(16324844-16324911)
chr8 (188-255)||(43801705-43801772)
chr8 (183-255)||(15009092-15009164)
chr8 (188-255)||(6911029-6911096)
chr8 (188-255)||(16325080-16325147)
chr8 (188-255)||(43801470-43801537)
chr8 (189-255)||(41403760-41403826)
chr8 (188-255)||(8489373-8489440)
chr8 (196-255)||(22781063-22781122)
chr8 (221-255)||(6911263-6911297)
chr8 (187-255)||(9133899-9133968)
[»] chr2 (13 HSPs)
chr2 (188-255)||(29893031-29893098)
chr2 (187-255)||(4371453-4371521)
chr2 (188-255)||(22563210-22563277)
chr2 (188-255)||(21265563-21265630)
chr2 (204-255)||(12232579-12232630)
chr2 (188-255)||(21265796-21265863)
chr2 (188-255)||(22563444-22563511)
chr2 (188-255)||(17200078-17200145)
chr2 (186-255)||(34645780-34645849)
chr2 (188-255)||(34645547-34645614)
chr2 (204-240)||(33491417-33491453)
chr2 (186-225)||(33491327-33491366)
chr2 (189-255)||(4682757-4682823)
[»] chr7 (9 HSPs)
chr7 (187-255)||(35207177-35207245)
chr7 (187-255)||(25048258-25048326)
chr7 (188-255)||(19318453-19318520)
chr7 (188-255)||(35207409-35207476)
chr7 (186-255)||(39983871-39983940)
chr7 (188-255)||(19318382-19318449)
chr7 (204-255)||(29474646-29474697)
chr7 (188-255)||(2834433-2834500)
chr7 (188-255)||(35363318-35363385)
[»] chr1 (12 HSPs)
chr1 (187-255)||(24883202-24883270)
chr1 (188-252)||(24882971-24883035)
chr1 (189-255)||(27171800-27171866)
chr1 (190-255)||(34969987-34970052)
chr1 (195-255)||(49777057-49777117)
chr1 (188-255)||(3385308-3385375)
chr1 (188-255)||(3385545-3385612)
chr1 (188-255)||(49776819-49776886)
chr1 (189-255)||(33401090-33401156)
chr1 (204-255)||(33156688-33156739)
chr1 (188-255)||(34622559-34622626)
chr1 (191-255)||(39781073-39781137)
[»] chr5 (10 HSPs)
chr5 (179-255)||(31193956-31194032)
chr5 (188-255)||(31194199-31194266)
chr5 (186-255)||(36955301-36955370)
chr5 (187-255)||(14076903-14076971)
chr5 (188-255)||(17370067-17370134)
chr5 (204-255)||(36955528-36955579)
chr5 (188-255)||(8754658-8754725)
chr5 (214-255)||(43449493-43449534)
chr5 (204-255)||(32347131-32347182)
chr5 (221-255)||(42546583-42546617)
[»] chr4 (16 HSPs)
chr4 (188-255)||(50544256-50544323)
chr4 (188-255)||(54316063-54316130)
chr4 (188-255)||(7061972-7062039)
chr4 (204-252)||(42475892-42475940)
chr4 (193-255)||(46993072-46993134)
chr4 (186-253)||(9551461-9551528)
chr4 (188-255)||(11789859-11789926)
chr4 (188-255)||(17914982-17915049)
chr4 (188-253)||(24673957-24674022)
chr4 (191-255)||(23655302-23655366)
chr4 (216-255)||(5466083-5466122)
chr4 (204-247)||(21785940-21785983)
chr4 (204-257)||(3556382-3556435)
chr4 (190-255)||(5465855-5465920)
chr4 (215-255)||(8538361-8538401)
chr4 (216-255)||(51959733-51959773)
[»] chr3 (13 HSPs)
chr3 (188-255)||(8799317-8799384)
chr3 (188-255)||(38499819-38499886)
chr3 (189-255)||(4041417-4041483)
chr3 (187-255)||(38500055-38500123)
chr3 (193-255)||(53197217-53197279)
chr3 (195-255)||(43797586-43797646)
chr3 (204-255)||(43797368-43797419)
chr3 (187-255)||(53196987-53197055)
chr3 (216-255)||(46883646-46883685)
chr3 (213-255)||(25349944-25349986)
chr3 (189-255)||(43797875-43797941)
chr3 (188-225)||(29828685-29828722)
chr3 (187-255)||(48346213-48346281)
[»] chr6 (3 HSPs)
chr6 (186-255)||(22748586-22748655)
chr6 (183-255)||(16125517-16125589)
chr6 (214-255)||(24197709-24197750)


Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 41722299 - 41722059
Alignment:
Q  18 aaatctcgtgaagaagaactttgccatctattgtagccttagctggtttgagatattaatcttcatagtcgtgattaaagaatacccattcattnnnnnn 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  41722299 aaatctcgtgaagaagaactttgccatctattgtagccttagctggtttgagatattaatcttcatagtcgtgattaaagaatacccattcattaaaaaa 41722200  T
Q  118 nnn-tgtaacagagctatctatttctttgttatctgcattctaccctttcaattttgagggtggggttgaggagttcgggtatgtttcatttaggctaag 216  Q
        |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  41722199 ataatgtaacagagctatctatttctttgttatctgcattctaccctttcaattttaatggtggggttgaggagttcgggtatgtttcatttaggctaag 41722100  T
Q  217 ctcaatttactctatttagggtttggatgcaagacatgttg 257  Q
    ||| ||||||| ||||||| | |||||||||||||||||||    
T  41722099 ctctatttactttatttagagcttggatgcaagacatgttg 41722059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 14999169 - 14999238
Alignment:
Q  186 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||| |||| | ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14999169 aggagttcggatatgctccatttaggctaagctcaatttactccatttagggtttggatgcaagacatgt 14999238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 41404063 - 41403994
Alignment:
Q  186 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||| ||||||| | |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  41404063 aggagtttgggtatgctccatttaggttaagttcaatttactctatttagggtttggatgcaagacatgt 41403994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 16324844 - 16324911
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||| ||| | |||||||||||||||||||||| || ||||||||||||||||||||||||||    
T  16324844 gagttcgggcatgctccatttaggctaagctcaatttaatccatttagggtttggatgcaagacatgt 16324911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 43801772 - 43801705
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||||| |||||||||||||||| |||||||| |||||| |||||||||||||| ||||    
T  43801772 gagttcgggtatgttccatttaggctaagctccatttactccatttagagtttggatgcaagatatgt 43801705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 15009164 - 15009092
Alignment:
Q  183 ttgaggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||| ||||||||||||| | |||||||||||||||  |||||||| |||||||||||||||| |||||||||    
T  15009164 ttgatgagttcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgtaagacatgt 15009092  T

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Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 6911029 - 6911096
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||| |||||| | |||||||||||||||| |||||||| |||||||||||||||| |||||||||    
T  6911029 gagttcaggtatgctccatttaggctaagctccatttactccatttagggtttggatgtaagacatgt 6911096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 16325147 - 16325080
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||| ||||| |||||||| || || ||| |||||||| ||||||||||||||||||||||||||    
T  16325147 gagttcgagtatgcttcatttaagccaaactccatttactccatttagggtttggatgcaagacatgt 16325080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 43801470 - 43801537
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| |||||||||||||| ||  |||||||| |||||| ||||||||| |||||||||    
T  43801470 gagttcgggtatgcttcatttaggctaaacttcatttactccatttagagtttggatgtaagacatgt 43801537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 41403760 - 41403826
Alignment:
Q  189 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||| |||||||||  |||||||||||||||| ||||||| ||| |||| |||| ||||    
T  41403760 agttcgggtatgcttcatttagattaagctcaatttactccatttaggattttgatgtaagatatgt 41403826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 8489373 - 8489440
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||| ||||||| | |||||||| ||||||  ||||| || |||||||||||||||| |||||||||    
T  8489373 gagtttgggtatgctccatttaggttaagcttcatttattccatttagggtttggatgtaagacatgt 8489440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 22781063 - 22781122
Alignment:
Q  196 gtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||| ||||||||||| ||  |||||||| ||| |||||||||||||||| |||||    
T  22781063 gtatgttttatttaggctaaacttcatttactccattcagggtttggatgcaaggcatgt 22781122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 6911297 - 6911263
Alignment:
Q  221 atttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||| ||||||||||||||||||||||||||    
T  6911297 atttactccatttagggtttggatgcaagacatgt 6911263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 9133899 - 9133968
Alignment:
Q  187 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttaggg-tttggatgcaagacatgt 255  Q
    |||||| ||||||| |  |||||||  ||||||||||||||| |||||||| |||||||||| |||||||    
T  9133899 ggagtttgggtatgctctatttaggtaaagctcaatttactccatttagggatttggatgcatgacatgt 9133968  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 29893098 - 29893031
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29893098 gagttcgggtatgctccatttaggctaagctctatttactctatttagggtttggatgcaagacatgt 29893031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 4371453 - 4371521
Alignment:
Q  187 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  4371453 ggagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgt 4371521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 22563210 - 22563277
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  22563210 gagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatgcaagacatgt 22563277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 21265563 - 21265630
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||| ||||||| | ||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  21265563 gagttagggtatgctccatttagactaagctcaatttactccatttagggtttggatgcaagacatgt 21265630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 12232579 - 12232630
Alignment:
Q  204 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||    
T  12232579 catttaggctaagctccatttactctatttagggtttggatgtaagacatgt 12232630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 21265863 - 21265796
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||| ||||| |  ||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  21265863 gagttcgagtatgctctatttaagctaagctccatttactctatttagggtttggatgcaagacatgt 21265796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 22563511 - 22563444
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | |||||||||||| ||| |||||||| ||||||| ||||||||||||||||||    
T  22563511 gagttcgggtatgctccatttaggctaaactccatttactccatttaggatttggatgcaagacatgt 22563444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 17200078 - 17200145
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | ||||||||| |||||| |||||||| ||||||| |||||||| |||||||||    
T  17200078 gagttcgggtatgctccatttaggcaaagctccatttactccatttaggatttggatgtaagacatgt 17200145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 34645849 - 34645780
Alignment:
Q  186 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||||| || |||||||||| | ||| ||||| || |||||||||||||||| |||||||||    
T  34645849 aggagttcgggtatattccatttaggcttaactccatttattccatttagggtttggatgtaagacatgt 34645780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 34645547 - 34645614
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| |  ||||||| |||| || |||||||| ||||||||| ||||||||||||||||    
T  34645547 gagttcgggtatgctctatttaggttaagttctatttactccatttagggtatggatgcaagacatgt 34645614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 204 - 240
Target Start/End: Complemental strand, 33491453 - 33491417
Alignment:
Q  204 catttaggctaagctcaatttactctatttagggttt 240  Q
    |||||||||||||||| ||||||||||||||||||||    
T  33491453 catttaggctaagctccatttactctatttagggttt 33491417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 225
Target Start/End: Original strand, 33491327 - 33491366
Alignment:
Q  186 aggagttcgggtatgtttcatttaggctaagctcaattta 225  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  33491327 aggagttcgggtatgttccatttaggctaagctccattta 33491366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 4682757 - 4682823
Alignment:
Q  189 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||||| ||||||   ||||||  |||||||| |||||| |||| ||||||||||||||    
T  4682757 agttcgggtatgttccatttaatttaagcttcatttactccatttagagtttagatgcaagacatgt 4682823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 35207177 - 35207245
Alignment:
Q  187 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| || |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  35207177 ggagttcgggtatattccatttaggctaagctccatttactccatttagggtttggatgcaagacatgt 35207245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 25048326 - 25048258
Alignment:
Q  187 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||||| | |||||||||||||||| |||||||  ||||||| ||||||||||||||||||    
T  25048326 ggagttcgggtatgctccatttaggctaagctccatttacttcatttaggatttggatgcaagacatgt 25048258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 19318520 - 19318453
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | |||||||||||||||| |||||||| ||||| ||||| ||||||||||||||    
T  19318520 gagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttagatgcaagacatgt 19318453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 35207476 - 35207409
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||| |||| | |||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  35207476 gagttcggatatgctccatttaggctaaactccatttactccatttagggtttggatgcaagacatgt 35207409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 39983940 - 39983871
Alignment:
Q  186 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||  ||||| | ||||||||| |||||| |||||||| ||||||||||||||||||||||||||    
T  39983940 aggagttcatgtatgctccatttaggcgaagctccatttactccatttagggtttggatgcaagacatgt 39983871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 19318449 - 19318382
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | |||||||||||||||  |||||||| ||||| ||||| ||||||||||||||    
T  19318449 gagttcgggtatgctccatttaggctaagcttcatttactccatttaaggtttagatgcaagacatgt 19318382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 29474697 - 29474646
Alignment:
Q  204 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||| ||| ||||||||||||||| | |||||||||||||||||    
T  29474697 catttaggctaaactccatttactctatttagagcttggatgcaagacatgt 29474646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 2834500 - 2834433
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||| ||||||| | ||||||||||||| || ||||| || ||||||||||||||| ||| ||||||    
T  2834500 gagtttgggtatgctccatttaggctaagttccatttattccatttagggtttggatacaaaacatgt 2834433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 35363318 - 35363385
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | ||||||||||||| |  |||||||| |||||| |||| ||||||| ||||||    
T  35363318 gagttcgggtatgctccatttaggctaagtttcatttactccatttagagtttagatgcaacacatgt 35363385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 24883270 - 24883202
Alignment:
Q  187 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| ||||    
T  24883270 ggagttcgggtatgttccatttaggctaagctccatttactccatttagggtttggatgcaagatatgt 24883202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 24882971 - 24883035
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagaca 252  Q
    ||||||||||||| | |||||||||||| ||| |||||||| |||||||||||||||||||||||    
T  24882971 gagttcgggtatgctccatttaggctaatctccatttactccatttagggtttggatgcaagaca 24883035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 189 - 255
Target Start/End: Original strand, 27171800 - 27171866
Alignment:
Q  189 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||| |||||||||||||||||  |||||||| ||||| |||||||||| |||||||||    
T  27171800 agttcgggtatgcttcatttaggctaagcttcatttactccatttatggtttggatgtaagacatgt 27171866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 34969987 - 34970052
Alignment:
Q  190 gttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||| |||||||||| ||| ||| |||||||| ||||||| ||||||||||||||||||    
T  34969987 gttcgggtatgcttcatttaggttaaactccatttactcaatttaggatttggatgcaagacatgt 34970052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 49777117 - 49777057
Alignment:
Q  195 ggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||| | |||||||||||| ||| ||||| |||||||||||||||||||||||||||||    
T  49777117 ggtatgctccatttaggctaaactccatttattctatttagggtttggatgcaagacatgt 49777057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 3385308 - 3385375
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| |||||||||||||||||   ||||| | |||||||||||||||| |||||||||    
T  3385308 gagttcgggtatgcttcatttaggctaagcttcgtttaccccatttagggtttggatgtaagacatgt 3385375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 3385612 - 3385545
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | ||||||||| |||||| |||||||| |||||||||||||||| |||| ||||    
T  3385612 gagttcgggtatgctccatttaggccaagctccatttactccatttagggtttggatgtaagatatgt 3385545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 49776819 - 49776886
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | |||||| ||||||||  |||||||| ||||||| ||||||||||||||||||    
T  49776819 gagttcgggtatgctccatttaagctaagctttatttactccatttaggatttggatgcaagacatgt 49776886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 33401156 - 33401090
Alignment:
Q  189 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||| |||| | |||||||||||||||||||||||| |||||| ||||| |||| |||||||||    
T  33401156 agttcggatatgctacatttaggctaagctcaatttactttatttaaggtttagatgtaagacatgt 33401090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 33156739 - 33156688
Alignment:
Q  204 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||||||  |||||||| ||||||||||||||| ||||||||||    
T  33156739 catttaggctaagctttatttactccatttagggtttggatacaagacatgt 33156688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 34622626 - 34622559
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | ||||||| |||||||| | |||||| ||||| |||||| |||||||||||||    
T  34622626 gagttcgggtatgctccatttagactaagctccagttactccatttaaggtttgaatgcaagacatgt 34622559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 39781073 - 39781137
Alignment:
Q  191 ttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||||||||||  |||| |  |||||||  |||||| |||||||||| ||||||||    
T  39781073 ttcgggtatgtttcatttagattaagtttcatttacttcatttagagtttggatgcgagacatgt 39781137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 179 - 255
Target Start/End: Original strand, 31193956 - 31194032
Alignment:
Q  179 ggggttgaggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||  ||||||||||||| | |||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  31193956 ggggttggtgagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgt 31194032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 31194266 - 31194199
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | |||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  31194266 gagttcgggtatgctccatttaggctaagctccatttactccatttaaggtttggatgcaagacatgt 31194199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 36955301 - 36955370
Alignment:
Q  186 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | | |||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  36955301 aggagttcgggtaggctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgt 36955370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 14076971 - 14076903
Alignment:
Q  187 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||| |||| | ||||||||||||| || |||||||| ||||||||||||||||||||||||||    
T  14076971 ggagttcggatatgctccatttaggctaagttctatttactccatttagggtttggatgcaagacatgt 14076903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 17370067 - 17370134
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | |||||| ||||| ||| |||||||| ||||||||||||||||||||||||||    
T  17370067 gagttcgggtatgctccatttatgctaaactccatttactccatttagggtttggatgcaagacatgt 17370134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 36955579 - 36955528
Alignment:
Q  204 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  36955579 catttaggctaagctctatttactctatttagggtttggttgcaagacatgt 36955528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 8754658 - 8754725
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||  | ||||||| |||| ||| ||||||||||||||||||||||||| |||||||||    
T  8754658 gagttcgggtatcctccatttagactaaactccatttactctatttagggtttggatggaagacatgt 8754725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 43449493 - 43449534
Alignment:
Q  214 aagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  43449493 aagctcaatttagtctatttaggctttggatgcaagacatgt 43449534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 32347182 - 32347131
Alignment:
Q  204 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||||||| | |||||| ||||| |||||||||| |||||||||    
T  32347182 catttaggctaagctccaattactccatttaaggtttggatgtaagacatgt 32347131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 255
Target Start/End: Complemental strand, 42546617 - 42546583
Alignment:
Q  221 atttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||| ||||||||||||||||||||||||||    
T  42546617 atttactccatttagggtttggatgcaagacatgt 42546583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 50544256 - 50544323
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||| |||| | |||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  50544256 gagttcggatatgctccatttaggctaagctccatttattctatttagggtttggatgcaagacatgt 50544323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 54316130 - 54316063
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||| |||||||| | |||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  54316130 gagtccgggtatgctccatttaggctaagctctatttactccatttagggtttggatgcaagacatgt 54316063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 7061972 - 7062039
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | |||||||||||| ||| |||||||| ||||| ||||||||||||||||||||    
T  7061972 gagttcgggtatgctccatttaggctaacctctatttactccatttatggtttggatgcaagacatgt 7062039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 204 - 252
Target Start/End: Original strand, 42475892 - 42475940
Alignment:
Q  204 catttaggctaagctcaatttactctatttagggtttggatgcaagaca 252  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||    
T  42475892 catttaggctaagcttcatttactctatttagggtttggatgcaagaca 42475940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 46993072 - 46993134
Alignment:
Q  193 cgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||| | |||||||| ||||||| ||||| |||||||||||||||||||||||| ||||    
T  46993072 cgggtatgctccatttaggttaagctccatttattctatttagggtttggatgcaagatatgt 46993134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 9551528 - 9551461
Alignment:
Q  186 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacat 253  Q
    ||||||||||||||| | ||||||| |||| ||| |||||||| |||||||| ||||||| |||||||    
T  9551528 aggagttcgggtatgctccatttagactaaactccatttactccatttagggcttggatggaagacat 9551461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 11789859 - 11789926
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | ||||||||| |||||  |||||||| ||||||||||| ||||||||| ||||    
T  11789859 gagttcgggtatgctccatttaggcaaagcttcatttactccatttagggtttagatgcaagatatgt 11789926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 188 - 255
Target Start/End: Complemental strand, 17915049 - 17914982
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||| |||| | ||||||||||||| || |||||||| |||||  |||||||||||||||||||    
T  17915049 gagttcggatatgctccatttaggctaagttccatttactccatttaaagtttggatgcaagacatgt 17914982  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 24674022 - 24673957
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacat 253  Q
    |||||||| |||| | |||||||||||| ||  ||||||||||||||| ||||||||| |||||||    
T  24674022 gagttcggatatgctccatttaggctaaacttcatttactctatttagagtttggatgtaagacat 24673957  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 255
Target Start/End: Complemental strand, 23655366 - 23655302
Alignment:
Q  191 ttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||| | |||||||| ||||||  ||||| || ||||||||||| ||||||||||||||    
T  23655366 ttcgggtatgctccatttaggttaagcttcatttattccatttagggtttagatgcaagacatgt 23655302  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 5466122 - 5466083
Alignment:
Q  216 gctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  5466122 gctctatttactctatttagggtttggatgtaagacatgt 5466083  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 21785983 - 21785940
Alignment:
Q  204 catttaggctaagctcaatttactctatttagggtttggatgca 247  Q
    |||||||||||||||| |||||||| |||||| |||||||||||    
T  21785983 catttaggctaagctccatttactccatttagagtttggatgca 21785940  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 3556382 - 3556435
Alignment:
Q  204 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgttg 257  Q
    |||||| ||||| ||  |||||||| ||||| ||||||||||||||||||||||    
T  3556382 catttaagctaaacttcatttactccatttaaggtttggatgcaagacatgttg 3556435  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 255
Target Start/End: Original strand, 5465855 - 5465920
Alignment:
Q  190 gttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||| | ||||||||||||| |  |||||||  ||||||||||| |||| |||||||||    
T  5465855 gttcgggtatgctccatttaggctaagtttcatttacttcatttagggtttagatgtaagacatgt 5465920  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 8538401 - 8538361
Alignment:
Q  215 agctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||| ||||| || ||||||||||||||||||||||||||    
T  8538401 agctccatttagtccatttagggtttggatgcaagacatgt 8538361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 51959773 - 51959733
Alignment:
Q  216 gctcaatttactctatttaggg-tttggatgcaagacatgt 255  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  51959773 gctcaatttagtctatttaggggtttggatgcaagacatgt 51959733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 8799317 - 8799384
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | ||||||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  8799317 gagttcgggtatgctccatttaggctaggctccatttactccatttagggtttggatgcaagacatgt 8799384  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 255
Target Start/End: Original strand, 38499819 - 38499886
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||| | |||||||||||||||| |||||||| ||||||||||||||| ||||||||||    
T  38499819 gagttcgggtatgctccatttaggctaagctccatttactccatttagggtttggatacaagacatgt 38499886  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 4041483 - 4041417
Alignment:
Q  189 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||| | |||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  4041483 agttcgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgt 4041417  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 38500123 - 38500055
Alignment:
Q  187 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||||| | |||||||||||||||| |||||||| | |||||||||||||| |||||||||    
T  38500123 ggagttcgggtatgctccatttaggctaagctccatttactccaattagggtttggatgtaagacatgt 38500055  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 255
Target Start/End: Complemental strand, 53197279 - 53197217
Alignment:
Q  193 cgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||| | |||||||||||||||  |||||||| ||||||||||||||||||||||||||    
T  53197279 cgggtatgctccatttaggctaagcttcatttactccatttagggtttggatgcaagacatgt 53197217  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 255
Target Start/End: Complemental strand, 43797646 - 43797586
Alignment:
Q  195 ggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||| | ||||||||||||| || ||||||||||||||||||||||||| |||||||||    
T  43797646 ggtatgctccatttaggctaagatccatttactctatttagggtttggatgaaagacatgt 43797586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 204 - 255
Target Start/End: Original strand, 43797368 - 43797419
Alignment:
Q  204 catttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||||||||||    
T  43797368 catttaggctaagctccatttactccatttaaggtttggatgcaagacatgt 43797419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 53196987 - 53197055
Alignment:
Q  187 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||||   |||||| ||||| ||  |||||||||||||||||||||||||||| ||||||    
T  53196987 ggagttcgggtatgccccatttaagctaaacttcatttactctatttagggtttggatgcaaaacatgt 53197055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 255
Target Start/End: Complemental strand, 46883685 - 46883646
Alignment:
Q  216 gctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  46883685 gctccatttactccatttagggtttggatgcaagacatgt 46883646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 255
Target Start/End: Complemental strand, 25349986 - 25349944
Alignment:
Q  213 taagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||    
T  25349986 taagctccatttattctatttagggtttggatgtaagacatgt 25349944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 43797941 - 43797875
Alignment:
Q  189 agttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||| |||||| |||||||  ||||||  | |||||||| |||||||| |||||||||||||||||    
T  43797941 agttcaggtatgcttcatttttgctaagtgctatttactccatttagggcttggatgcaagacatgt 43797875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 225
Target Start/End: Original strand, 29828685 - 29828722
Alignment:
Q  188 gagttcgggtatgtttcatttaggctaagctcaattta 225  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  29828685 gagttcgggtatgcttcatttaggctaagctccattta 29828722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 48346281 - 48346213
Alignment:
Q  187 ggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||||| | |||||||| | || || ||||||| |||||||  ||||||||||| ||||||    
T  48346281 ggagttcgggtatgctccatttaggttgagttctatttactttatttagaatttggatgcaaaacatgt 48346213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 22748586 - 22748655
Alignment:
Q  186 aggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    ||||||||||||||| |  |||||||||| |||| |||||||| ||||| | ||||||||||||||||||    
T  22748586 aggagttcgggtatgctcaatttaggctatgctccatttactccatttaagatttggatgcaagacatgt 22748655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 255
Target Start/End: Original strand, 16125517 - 16125589
Alignment:
Q  183 ttgaggagttcgggtatgtttcatttaggctaagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||| ||||||||||||| | |||||||||||| ||  ||||| |  ||||||||||||||||||||||||||    
T  16125517 ttgacgagttcgggtatgctccatttaggctaaacttcatttatttcatttagggtttggatgcaagacatgt 16125589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 24197709 - 24197750
Alignment:
Q  214 aagctcaatttactctatttagggtttggatgcaagacatgt 255  Q
    |||||||||||| |||||||||  ||||||||||||||||||    
T  24197709 aagctcaatttagtctatttagactttggatgcaagacatgt 24197750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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