View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13423_low_9 (Length: 350)
Name: NF13423_low_9
Description: NF13423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13423_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 9652593 - 9652924
Alignment:
| Q |
1 |
caatgtccttatgccttcaaacatttgagagcaccctgtcatcagacggtgcttgatacatgtcatttgttgttcagttttcaagcatgttaccatggag |
100 |
Q |
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| T |
9652593 |
caatgtccttatgccttcaaacatttgagagcaccctgtcatcagacggtgcttgatacatgtcatttgttgttcagttttcaagcatgttaccacggag |
9652692 |
T |
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| Q |
101 |
ttatgccaaagaaattttgatatttgtttgtgctaagttttgtaatatttgagttgaacgttttcggatggtggtggaagataagctgagattttatcat |
200 |
Q |
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| T |
9652693 |
ttatgccaaagaaattttgatatttgtttgtgctaagttttgtaatatttgagttgaacgttttcggatggtggtggaagataagctgagattttatcat |
9652792 |
T |
|
| Q |
201 |
tatttatgcaaaactttgattgcattatgcttcttttcgattaaaattttccttgttaatgttagatgatgataatgagcaaattttctgctgtgtccat |
300 |
Q |
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| T |
9652793 |
tatttatgcaaaactttgattgcattatgcttcttttcgattaaaattttccttgttaatgttagatgatgataatgagcaaattttctgctgtgtccat |
9652892 |
T |
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| Q |
301 |
tttagctagactcgtttgttttgggttggggt |
332 |
Q |
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| T |
9652893 |
tttagctaaactcatttgttttgggttggggt |
9652924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 128 - 270
Target Start/End: Complemental strand, 34734341 - 34734199
Alignment:
| Q |
128 |
ttgtgctaagttttgtaatatttgagttgaacgttttcggatggtggtggaagataagctgagattttatcattatttatgcaaaactttgattgcatta |
227 |
Q |
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| T |
34734341 |
ttgtgctaagttttgtaatatttgagtcgagtgttttgagatggtggtggaagctaaactgagatattatcattatttatgc-aaactttgcttgtatta |
34734243 |
T |
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| Q |
228 |
tgcttcttttcga-ttaaaattttccttgttaatgttagatgat |
270 |
Q |
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| T |
34734242 |
tgtttcttttcgactaaaaaatattcttgtttatgttagatgat |
34734199 |
T |
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