View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13424_high_1 (Length: 666)
Name: NF13424_high_1
Description: NF13424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13424_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 622; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 16 - 652
Target Start/End: Complemental strand, 49520798 - 49520161
Alignment:
| Q |
16 |
caatattagattggcaaagaaggaccatggagatgatgtatactgagattgctgatgccataaaaa-gaagaacattgaagcacaccctcgtgattattt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49520798 |
caatattagattggcaaagaaggaccatggagatgatgtatactgagattgctgatgccataaaaaagaagaacattgaagcacaccctcgtgattattt |
49520699 |
T |
|
| Q |
115 |
gacattttattgtcttggtaaaagggagagtaagaaagatggagagtacactcctccagaggaaccagcgcctgacagtgattatcatagagcacaaaag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49520698 |
gacattttattgtcttggtaaaagggagagtaagaaagatggagagtacactcctccagaggaaccagcgcctgacagtgattatcatagagcacaaaag |
49520599 |
T |
|
| Q |
215 |
tctagaagattcatgatctatgttcattccaagatgatgataggtaagatgccaaataatcctataatatatatttggcataatttacatttttgagcat |
314 |
Q |
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| T |
49520598 |
tctagaagattcatgatctatgttcattccaagatgatgataggtaagatgctaaataatcctataatatatatttggcataatttacatttttgagcat |
49520499 |
T |
|
| Q |
315 |
cgaattgtgcatagagactaacattgattgtttgctttattttgttcctgtagtggatgatgaatacatagtgattggttcagcaaacataaaccaaaga |
414 |
Q |
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| T |
49520498 |
cgaattgtgcatagagactaacattgattgtttgctttattttgttcctgtagtggatgatgaatacatagtgattggttcagcaaacataaaccaaaga |
49520399 |
T |
|
| Q |
415 |
tcaatggatggtggaagagacacagagattgcaatgggtgcatttcaacctcatcatctagcatccacatccaatggctcacaaagaccacaaggtcagg |
514 |
Q |
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| T |
49520398 |
tcaatggatggtggaagagacacagagattgcaatgggtgcatttcaacctcatcatctagcatccacatccaatggctcacaaagaccacaaggtcagg |
49520299 |
T |
|
| Q |
515 |
tgtatggcttcaggagagcattatggtatgaacacattggagataacagcgatgattttgacgagcctgaaaggctggaatgtgtaaaacttttgaaccg |
614 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49520298 |
tatatggcttcaggagagcattatggtatgaacacattggagataacagcgatgattttgacgagcctgaaaggctggaatgtgtaaaacttttgaaccg |
49520199 |
T |
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| Q |
615 |
cgttgctgagaggaattggaaattatactgtgatgatg |
652 |
Q |
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| T |
49520198 |
cgttgctgagaggaattggaaattatactgtgatgatg |
49520161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 16 - 262
Target Start/End: Complemental strand, 49509652 - 49509405
Alignment:
| Q |
16 |
caatattagattggcaaagaaggaccatggagatgatgtatactgagattgctgatgccataaaaagaa-gaacattgaagcacaccctcgtgattattt |
114 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| ||| | |||||| | || ||| |||| | ||||| || |
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| T |
49509652 |
caatattagattggcaaagaaggactatggagatgatgtattctgacattgctgaagcccttcaaagaaaggggatcagagccaacccaagagattactt |
49509553 |
T |
|
| Q |
115 |
gacattttattgtcttggtaaaagggagagtaagaaagatgga-gagtacactcctccagaggaaccagcgcctgacagtgattatcatagagcacaaaa |
213 |
Q |
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| |||||||||| ||||| || | ||| |||||||| ||| | || || ||| || |||| | ||||| ||||||||||||||| |||||||||||| |
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| T |
49509552 |
gtcattttattgccttggaaaccgagagggtaagaaa-atgaatgaatatacttctacagaagcaccagaacctgacagtgattatagtagagcacaaaa |
49509454 |
T |
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| Q |
214 |
gtctagaagattcatgatctatgttcattccaagatgatgataggtaag |
262 |
Q |
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||||||||||||||||| ||||||||| |||| ||||||||||||||| |
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| T |
49509453 |
ttctagaagattcatgatatatgttcatgccaaaatgatgataggtaag |
49509405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 370 - 464
Target Start/End: Complemental strand, 49509171 - 49509077
Alignment:
| Q |
370 |
gatgatgaatacatagtgattggttcagcaaacataaaccaaagatcaatggatggtggaagagacacagagattgcaatgggtgcatttcaacc |
464 |
Q |
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||||||||||||||| | |||||||| || |||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| |
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| T |
49509171 |
gatgatgaatacataatcattggttctgccaacataaatcaaagatcaatggatggtgcaagagacagtgagattgcaataggtgcatttcaacc |
49509077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 262
Target Start/End: Original strand, 44663124 - 44663162
Alignment:
| Q |
224 |
ttcatgatctatgttcattccaagatgatgataggtaag |
262 |
Q |
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| T |
44663124 |
ttcatgatctatgttcatgccaagatgatgataggtaag |
44663162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 452
Target Start/End: Original strand, 44663620 - 44663702
Alignment:
| Q |
370 |
gatgatgaatacatagtgattggttcagcaaacataaaccaaagatcaatggatggtggaagagacacagagattgcaatggg |
452 |
Q |
| |
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||||||||||||||| | | || || || ||||| |||||||||||||||||||||| |||||| | || ||||||||||| |
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| T |
44663620 |
gatgatgaatacataattgtcggatctgccaacatcaaccaaagatcaatggatggtgctagagactctgaaattgcaatggg |
44663702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 224 - 262
Target Start/End: Complemental strand, 2415934 - 2415896
Alignment:
| Q |
224 |
ttcatgatctatgttcattccaagatgatgataggtaag |
262 |
Q |
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|||||||| ||||||||| |||||||||||||||||||| |
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| T |
2415934 |
ttcatgatatatgttcataccaagatgatgataggtaag |
2415896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 5401739 - 5401783
Alignment:
| Q |
217 |
tagaagattcatgatctatgttcattccaagatgatgataggtaa |
261 |
Q |
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| T |
5401739 |
tagaagattcatggtttatgttcattccaagctcatgataggtaa |
5401783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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