View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13424_high_11 (Length: 237)

Name: NF13424_high_11
Description: NF13424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13424_high_11
NF13424_high_11
[»] chr3 (4 HSPs)
chr3 (1-220)||(39398769-39398989)
chr3 (1-70)||(38175582-38175651)
chr3 (1-52)||(9697870-9697921)
chr3 (1-52)||(43548006-43548057)
[»] chr8 (5 HSPs)
chr8 (1-66)||(33072197-33072262)
chr8 (1-66)||(1286908-1286972)
chr8 (1-66)||(42234504-42234569)
chr8 (92-220)||(26276773-26276901)
chr8 (1-62)||(1291616-1291676)
[»] chr4 (6 HSPs)
chr4 (1-66)||(35843026-35843091)
chr4 (1-69)||(31354966-31355034)
chr4 (18-69)||(31359439-31359490)
chr4 (1-66)||(43683484-43683549)
chr4 (1-52)||(27186428-27186479)
chr4 (1-52)||(50627765-50627817)
[»] chr7 (1 HSPs)
chr7 (1-69)||(733477-733543)
[»] chr1 (2 HSPs)
chr1 (7-52)||(3742769-3742814)
chr1 (1-52)||(10504716-10504768)
[»] chr2 (2 HSPs)
chr2 (1-52)||(13270845-13270897)
chr2 (1-52)||(35950263-35950315)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 39398989 - 39398769
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgctatcaggtccttgtattcccttaatgcgtttggaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||    
T  39398989 ccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcactatcaggtccttgtattcccttaatgcatttggaaa 39398890  T
Q  101 ggcttattgttatctataatgggatgagttcagctggtcaattcggtgattagtagtatgttactttactcgtttcatgtttatctttggcctaccaatc 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39398889 ggcttattgttatctataatgggacgagttcagctggtcaattcggtgattagtagtatgttactttactcgtttcatgtttatctttggcctaccaatc 39398790  T
Q  201 ttctgcagcaa-ctaaccaag 220  Q
    ||||||||||| |||||||||    
T  39398789 ttctgcagcaacctaaccaag 39398769  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 38175651 - 38175582
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgctatcag 70  Q
    |||||||||||||||||||| |||||| |||||||||||||||||||| ||||| ||| |||||||||||    
T  38175651 ccctagaaactacaaaactgtttctgatttcattgcttgttgaacaagatttgtagtgttgcgctatcag 38175582  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 9697870 - 9697921
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagcttt 52  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  9697870 ccctagaaactacaaaattgcttctggtttcattgcttgttgaacaagcttt 9697921  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 43548006 - 43548057
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagcttt 52  Q
    ||||| ||||||||||| ||||||||  ||||||||||||||||||||||||    
T  43548006 ccctaaaaactacaaaattgcttctggtttcattgcttgttgaacaagcttt 43548057  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 33072197 - 33072262
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgcta 66  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  33072197 ccctagaaactacaaatttgcttctgagttcattgcttgttgaacaagctttgttgtactgcgcta 33072262  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1286908 - 1286972
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgcta 66  Q
    |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |||||||    
T  1286908 ccctagaaactacaaa-ctgcttctgatttcattgcttgttgaacaagctttgttgtgttgcgcta 1286972  T

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Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 42234569 - 42234504
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgcta 66  Q
    ||||| ||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  42234569 ccctaaaaactacaaaattgcttctggtttcattgcttgttgaacaagctttgttgtgctgcgcta 42234504  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 92 - 220
Target Start/End: Complemental strand, 26276901 - 26276773
Alignment:
Q  92 gtttggaaaggcttattgttatctataatgggatgagttcagctggtcaattcggtgattagtagtatgttactttactcgtttcatgtttatctttggc 191  Q
    ||||||||||||||  ||||||||||||||||  |||| || || |||||||| ||||| | ||||||| | || ||||| ||||||||||||| |||||    
T  26276901 gtttggaaaggcttgctgttatctataatggggagagtacaacttgtcaattctgtgataaatagtatgctgctgtactcatttcatgtttatccttggc 26276802  T
Q  192 ctaccaatcttctgcagcaactaaccaag 220  Q
    || | |||||| || ||||  ||||||||    
T  26276801 ctgctaatcttttgaagcagttaaccaag 26276773  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 1291616 - 1291676
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgc 62  Q
    |||||||||||||||| |||||| ||| ||||||| |||||||| |||||||||||||||||    
T  1291616 ccctagaaactacaaa-ctgcttatgatttcattgtttgttgaataagctttgttgtgctgc 1291676  T

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Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 35843026 - 35843091
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgcta 66  Q
    ||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35843026 ccctaaaaactacaaatctgcttctgagttcattgtttgttgaacaagctttgttgtgctgcgcta 35843091  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 31354966 - 31355034
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgctatca 69  Q
    |||||||||||||||| ||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  31354966 ccctagaaactacaaatctgcttacgagttcattgcttgttgaacaagctttgttgtactgcgctatca 31355034  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 31359439 - 31359490
Alignment:
Q  18 ctgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgctatca 69  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31359439 ctgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgctatca 31359490  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 43683549 - 43683484
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgcta 66  Q
    |||||||||||| |||| ||||||||  |||||||||||||||||||||||||||||| |||||||    
T  43683549 ccctagaaactaaaaaattgcttctggtttcattgcttgttgaacaagctttgttgtgttgcgcta 43683484  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 27186428 - 27186479
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagcttt 52  Q
    ||||||||||||||||| ||||||||  ||||||||||||||||||||||||    
T  27186428 ccctagaaactacaaaattgcttctggtttcattgcttgttgaacaagcttt 27186479  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 50627817 - 50627765
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagtt-cattgcttgttgaacaagcttt 52  Q
    ||||||||||||||||| ||||||||  || ||||||||||||||||||||||    
T  50627817 ccctagaaactacaaaattgcttctggttttcattgcttgttgaacaagcttt 50627765  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 733543 - 733477
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagttcattgcttgttgaacaagctttgttgtgctgcgctatca 69  Q
    |||||||||| | |||| ||||||||  |||||||||||||||||||||||  | ||||||||||||||    
T  733543 ccctagaaacaaaaaaattgcttctggtttcattgcttgttgaacaagctt--tagtgctgcgctatca 733477  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 52
Target Start/End: Original strand, 3742769 - 3742814
Alignment:
Q  7 aaactacaaaactgcttctgagttcattgcttgttgaacaagcttt 52  Q
    ||||||||||| ||||| ||| ||||||||||||||||||||||||    
T  3742769 aaactacaaaattgcttttgatttcattgcttgttgaacaagcttt 3742814  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 10504716 - 10504768
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagtt-cattgcttgttgaacaagcttt 52  Q
    ||||||||||||||||| ||||||||  || ||||||||||||||||||||||    
T  10504716 ccctagaaactacaaaattgcttctgtttttcattgcttgttgaacaagcttt 10504768  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 13270897 - 13270845
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagtt-cattgcttgttgaacaagcttt 52  Q
    ||||||||||||||||| ||||||||  || ||||||||||||||||||||||    
T  13270897 ccctagaaactacaaaattgcttctggttttcattgcttgttgaacaagcttt 13270845  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 35950315 - 35950263
Alignment:
Q  1 ccctagaaactacaaaactgcttctgagtt-cattgcttgttgaacaagcttt 52  Q
    ||||||||||||||||| ||||||||  || ||||||||||||||||||||||    
T  35950315 ccctagaaactacaaaattgcttctggttttcattgcttgttgaacaagcttt 35950263  T

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