View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13424_high_12 (Length: 231)

Name: NF13424_high_12
Description: NF13424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13424_high_12
NF13424_high_12
[»] chr3 (2 HSPs)
chr3 (114-174)||(8525319-8525379)
chr3 (15-44)||(8525220-8525249)
[»] chr6 (1 HSPs)
chr6 (135-204)||(25520683-25520752)
[»] chr5 (1 HSPs)
chr5 (16-48)||(42125748-42125780)
[»] chr2 (1 HSPs)
chr2 (131-204)||(12250641-12250710)


Alignment Details
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 114 - 174
Target Start/End: Original strand, 8525319 - 8525379
Alignment:
Q  114 ccacaccattatgaataaatgattttgtggaaagtgttaccaaatggtttatgtgaatgaa 174  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  8525319 ccacaccattatgaatatatgattttgtggaaagtgttaccaaatggtttatgtgaatgaa 8525379  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 8525220 - 8525249
Alignment:
Q  15 atgaagcaaagcagagctctcataatgatg 44  Q
    ||||||||||||||||||||||||||||||    
T  8525220 atgaagcaaagcagagctctcataatgatg 8525249  T

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Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 204
Target Start/End: Complemental strand, 25520752 - 25520683
Alignment:
Q  135 attttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaat 204  Q
    ||||| ||||||||||||| |||||||||||||||||||| | |||| ||||||||||||||||||||||    
T  25520752 attttttggaaagtgttactaaatggtttatgtgaatgaaaaacaatagaaaagtaagtgtggatgaaat 25520683  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 42125748 - 42125780
Alignment:
Q  16 tgaagcaaagcagagctctcataatgatgacat 48  Q
    |||||||||||||||||||||| ||||||||||    
T  42125748 tgaagcaaagcagagctctcatcatgatgacat 42125780  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 204
Target Start/End: Original strand, 12250641 - 12250710
Alignment:
Q  131 aatgattttgtggaaagtgttaccaaatggtttatgtgaatgaagatcaattgaaaagtaagtgtggatgaaat 204  Q
    ||||||||||||||||||||    ||||||||||  |||| ||| | |||| |||||| |||||||||||||||    
T  12250641 aatgattttgtggaaagtgt----aaatggtttaactgaaagaaaaccaatagaaaagcaagtgtggatgaaat 12250710  T

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