View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13424_high_13 (Length: 226)
Name: NF13424_high_13
Description: NF13424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13424_high_13 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 25613925 - 25613707
Alignment:
| Q |
8 |
aactgatatctgctctgaccaacttggacaagggtttaaacccttccgctgcattgtcttctacaaatctcgtatattcacgacaaaaagtatgtaaatc |
107 |
Q |
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| T |
25613925 |
aactgatatctgctctgaccaacttggacaagggtttaaacccttccgctgcattgtcttctacaaatctcgtatattcacgaccaaaagtatgtaaatc |
25613826 |
T |
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| Q |
108 |
ttctagaactggacaaccattaagaagtttcatgatatctttattgtatgtaaaacagatttctttcaaagataggattttgagagatggaagatcaaca |
207 |
Q |
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| T |
25613825 |
ttctagaactggacaaccattaagaagtttcatgatatctttattgtatgtaaaacagatttctttcaaagataggattttgagagatggaagatcaaca |
25613726 |
T |
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| Q |
208 |
cataaattttcagctttaa |
226 |
Q |
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| T |
25613725 |
cacaaattttcagctttaa |
25613707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 226
Target Start/End: Complemental strand, 31262064 - 31261867
Alignment:
| Q |
11 |
tgatatctgctctgaccaacttggacaagggtttaaacccttccgctgcattgtcttctacaaatctcgtatattcacgacaaaaagtatgtaaatcttc |
110 |
Q |
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| T |
31262064 |
tgatatctgctctgaccaacttggacaagggtttaaacccttccgctgcattattttcttcaactctcgtgt------------------gtaaatcttc |
31261983 |
T |
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| Q |
111 |
tagaactggacaaccattaagaagtttcatgatatctttattgtatgtaaaacagatttctttcaaagataggattttgagagatggaagatcaacacat |
210 |
Q |
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| T |
31261982 |
tagaacaggacatccattaagaagtttcatgaaatcattcttgtatttaaaacagatttctaccaaatgtaggattttgagagatggaagatcaacacac |
31261883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 24112251 - 24112215
Alignment:
| Q |
171 |
tttcaaagataggattttgagagatggaagatcaaca |
207 |
Q |
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| T |
24112251 |
tttcaaacctaggattttgagagatggaagatcaaca |
24112215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 15498140 - 15498102
Alignment:
| Q |
185 |
ttttgagagatggaagatcaacacataaattttcagctt |
223 |
Q |
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| T |
15498140 |
ttttgagagatggaagatgaacacacaaattttcagctt |
15498102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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