View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13424_high_6 (Length: 345)
Name: NF13424_high_6
Description: NF13424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13424_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 179
Target Start/End: Complemental strand, 27244639 - 27244488
Alignment:
| Q |
16 |
acgaaaaatatgattgctcacaagtacacgtttcgaagaaaagactagaacaatgggaaacgactctcaaaaacgattaatgaaaatgttagagaaaacc |
115 |
Q |
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| T |
27244639 |
acgaaaaagatgattgctcacaagtacacgtttcgaagaaaagactagaacaatgggaaacgactctcaataacgattaatg------------aaaacc |
27244552 |
T |
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| Q |
116 |
aaacaagataagatgaaaaaatttcgctgattttcttccctctagataatccgattaaagatcg |
179 |
Q |
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| T |
27244551 |
aaacaagataagatgaaaaaatttcgttgatcttcttccctctagataatccgattaaagatcg |
27244488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 259 - 330
Target Start/End: Complemental strand, 27244407 - 27244336
Alignment:
| Q |
259 |
ctctcaatataattgacttggtgcatcacccatgtacactctatagcaaaatgactcgaatgggaaccatgt |
330 |
Q |
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| T |
27244407 |
ctctcaatataattaacttcgtgcatcacctaggtacactctatagtaaaatgactcggatgggaaccatgt |
27244336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 122
Target Start/End: Complemental strand, 27282718 - 27282630
Alignment:
| Q |
33 |
tcacaagtacacgtttcgaagaaaa-gactagaacaatgggaaacgactctcaaaaacgattaatgaaaatgttagagaaaaccaaacaag |
122 |
Q |
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| T |
27282718 |
tcacaagtacacgtttcaaagaaaaagactagaataatgggaaaagactctcaaag--gaataatgaaaatgttagagaaacccaaacaag |
27282630 |
T |
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