View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13424_low_1 (Length: 763)
Name: NF13424_low_1
Description: NF13424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13424_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 695; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 695; E-Value: 0
Query Start/End: Original strand, 16 - 750
Target Start/End: Original strand, 10680196 - 10680930
Alignment:
| Q |
16 |
atgaagaaaacactgtcttggtgggacttgatatggtttggcatgggaagtgtcattggttcgggtatttttgtactaacaggacttgaagttaagaaca |
115 |
Q |
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| T |
10680196 |
atgaagaaaacactgtcttggtgggacttgatatggtttggcatgggaagtgtcattggttcaggtatttttgtactaacaggacttgaagttaagaaca |
10680295 |
T |
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| Q |
116 |
ctgtgggacctgctgtggttttatcatatattgtctcgggaatttcagctatgttgtctgttttttgttacactgaatttgctgtggaaatccctgtggc |
215 |
Q |
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| T |
10680296 |
ctgtgggacctgctgtggttttatcatatattgtctcgggcatttctgctatgttgtctgttttttgttacactgaatttgctgtggaaatccctgtggc |
10680395 |
T |
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| Q |
216 |
tggtacgtaattttttgtatgttatttgttcaagtctcttttagcaacaactgaaaaatgttggtaaaacctttgactaacatttcttttattataggtg |
315 |
Q |
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| T |
10680396 |
tggtacgtaattttttgtatgttatttgttcaagtctcttttagcaacaactgaaaaatgttggcaaaacctttgactaacatttcttttattataggtg |
10680495 |
T |
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| Q |
316 |
gttcttttgcttacataagagttgagcttggtgaatttgtagcattcatagcatcaggaaacattattcttgaatatgtgattggtggtgctgcagtctc |
415 |
Q |
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| T |
10680496 |
gttcttttgcttacataagagttgaacttggtgaatttgtagcattcatagcatcaggaaacattattcttgaatatgtgattggtggtgctgcagtctc |
10680595 |
T |
|
| Q |
416 |
acgttcatggacatcctattttgcaacactttgcaaccaaccatcagacaaattcctcatcatagtcgattccctagcaaacgattacaatgaacttgac |
515 |
Q |
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| T |
10680596 |
acgttcatggacatcctattttgcaacactttgcaaccaaccatcagacaaattcctcatcatagtcgattccctagcaaacgattacaatgaacttgac |
10680695 |
T |
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| Q |
516 |
cctattgctgtttttgctcttgcaattattaccacctttgcaattttcagcacaaagggttcctcacgtttaaactacattgcctcaataatacatgtta |
615 |
Q |
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| T |
10680696 |
cctattgctgtttttgctcttgcaattattaccacctttgcaattttcagcacaaagggttcctcacgtttaaactacattgcctcaataatacacgtta |
10680795 |
T |
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| Q |
616 |
ttgtcctaatgttcataatagttgctggtttatcacaagctaatgctgaaaattacaaaaatttcacaccttttggaactagaggaatctttgcatccgc |
715 |
Q |
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| T |
10680796 |
ttgtcctaatgttcataatagttgctggtttatcacaagctaaagctgaaaattacaaagatttcacaccttttggaaccagaggaatctttgcatccgc |
10680895 |
T |
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| Q |
716 |
tgcagttttgtttttcgcttatgttggatttgatg |
750 |
Q |
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| T |
10680896 |
tgcagttttgtttttcgcttatgttggattcgatg |
10680930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 37135622 - 37135667
Alignment:
| Q |
167 |
tgttgtctgttttttgttacactgaatttgctgtggaaatccctgt |
212 |
Q |
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| T |
37135622 |
tgttgtctgttttttgctacaccgaatttgcagtggaaattcctgt |
37135667 |
T |
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