View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13424_low_11 (Length: 327)
Name: NF13424_low_11
Description: NF13424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13424_low_11 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold1089 (1 HSPs) |
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| [»] scaffold0571 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 5 - 327
Target Start/End: Original strand, 25613210 - 25613532
Alignment:
| Q |
5 |
gaaacaaacagtacgcattctaccaccacactctcgaaaaagaatggcacaatcggagaacctaatggcaatcgataggctcagcagtttacctgatgat |
104 |
Q |
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| T |
25613210 |
gaaacaaacagtacgcattctaccaccacactctcgaaaaagaatggcacaatcggagaacctaatggcaatcgataggctcagcagtttacctgatgat |
25613309 |
T |
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| Q |
105 |
atattacgtcacatactctctctttttccaaccaaactcgctttcaccaccaccgttctttctaaacagtggacccaactctgcgattcagtcacttctc |
204 |
Q |
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| T |
25613310 |
atattatgtcacatactctctcttcttccaaccaaattcgctttcaccaccaccgttctttctaaacaatggacccaactctgcggttcactcacttctc |
25613409 |
T |
|
| Q |
205 |
tccgctctgacgaccaggaaactgtgcgagactgcagccacttcaatagcttctgtcgcatggtgaatgcattcatgctctctcctcgagaacaaaacca |
304 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| ||| || |
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| T |
25613410 |
tccgctctgacgacgaggaaactgtgcgagactgcagccacttcaatagcttctgtcgtatggtgaatgcagtcatgctctctcctcgggaaccaaatca |
25613509 |
T |
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| Q |
305 |
tcccatcaaaccgttttacataa |
327 |
Q |
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| T |
25613510 |
tcccatcaaaacgttttacataa |
25613532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 40 - 210
Target Start/End: Original strand, 31261399 - 31261569
Alignment:
| Q |
40 |
gaaaaagaatggcacaatcggagaacctaatggcaatcgataggctcagcagtttacctgatgatatattacgtcacatactctctctttttccaaccaa |
139 |
Q |
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| T |
31261399 |
gaaaaagaatggcacaattggagaacccagtggctatcgatagaatcagcagtttacctgacgatatattatgtcacatactctctcttcttcctaccaa |
31261498 |
T |
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| Q |
140 |
actcgctttcaccaccaccgttctttctaaacagtggacccaactctgcgattcagtcacttctctccgct |
210 |
Q |
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| T |
31261499 |
tctcgctttcaccaccaccgttctttccaaacgatggacacaactctggtattcactcgcttctctccgct |
31261569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 1690 - 1603
Alignment:
| Q |
93 |
ttacctgatgatatattacgtcacatactctctctttttccaaccaaactcgctttcaccaccaccgttctttctaaacagtggaccc |
180 |
Q |
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| T |
1690 |
ttacctgatgaattattatgtcacatactctcttttcttcccaccaaaatcgctttcactaccacagttctttcgaagcggtggaccc |
1603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 14439331 - 14439244
Alignment:
| Q |
93 |
ttacctgatgatatattacgtcacatactctctctttttccaaccaaactcgctttcaccaccaccgttctttctaaacagtggaccc |
180 |
Q |
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| T |
14439331 |
ttacctgatgaattattatgtcacatactctcttttcttcccaccaaaatcgctttcactaccagagttctttcgaagcggtggaccc |
14439244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 14436194 - 14436116
Alignment:
| Q |
93 |
ttacctgatgatatattacgtcacatactctctctttttccaaccaaactcgctttcaccaccaccgttctttctaaac |
171 |
Q |
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| T |
14436194 |
ttacccgatgaattattatgtcacatactctcttttcttcccatcaaaatcgctttcactaccacccttctttcaaaac |
14436116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 43685572 - 43685499
Alignment:
| Q |
93 |
ttacctgatgatatattacgtcacatactctctctttttccaaccaaactcgctttcaccaccaccgttctttc |
166 |
Q |
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||||| ||||| ||||| ||||||||||||| || |||| |||| |||||||||||||||||| |||||||| |
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| T |
43685572 |
ttaccagatgaaatattgtgtcacatactctcctttcttccgaccatactcgctttcaccaccactgttctttc |
43685499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 186
Target Start/End: Complemental strand, 43694634 - 43694541
Alignment:
| Q |
93 |
ttacctgatgatatattacgtcacatactctctctttttccaaccaaactcgctttcaccaccaccgttctttctaaacagtggacccaactct |
186 |
Q |
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| T |
43694634 |
ttaccagatgaaatattgtgtcacatactctcttttattccgaccatattcgctttgaccaccactgttctttcaaagcggtggaccccactct |
43694541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 49171643 - 49171556
Alignment:
| Q |
76 |
tcgataggctcagcagtttacctgatgatatattacgtcacatactctctctttttccaaccaaactcgctttcaccaccaccgttct |
163 |
Q |
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| T |
49171643 |
tcgataggatcagccatttacctgatgacatactttgtataatactttcttttcttccaaccaaattcgctttcaccaccaccgttct |
49171556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 76 - 163
Target Start/End: Original strand, 49178456 - 49178543
Alignment:
| Q |
76 |
tcgataggctcagcagtttacctgatgatatattacgtcacatactctctctttttccaaccaaactcgctttcaccaccaccgttct |
163 |
Q |
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| T |
49178456 |
tcgataggatcagccatttaccagatgatatactctgtagaatactctcttttctcccaacaaaactcgctttcaccaccaccgttct |
49178543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0571 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0571
Description:
Target: scaffold0571; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 210
Target Start/End: Complemental strand, 505 - 407
Alignment:
| Q |
112 |
gtcacatactctctctttttccaaccaaactcgctttcaccaccaccgttctttctaaacagtggacccaactctgcgattcagtcacttctctccgct |
210 |
Q |
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|||||||||| ||| || |||| | |||| |||||||||| |||||||||||||| |||| ||||| || ||| ||| | ||| ||||| |||||||| |
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| T |
505 |
gtcacatactttcttttcttcccatcaaaatcgctttcactaccaccgttctttcgaaacggtggatcccactttgccactcactcactattctccgct |
407 |
T |
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