View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13424_low_4 (Length: 642)

Name: NF13424_low_4
Description: NF13424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13424_low_4
NF13424_low_4
[»] chr3 (11 HSPs)
chr3 (358-614)||(4165965-4166221)
chr3 (358-611)||(4150199-4150452)
chr3 (9-174)||(4150693-4150858)
chr3 (9-174)||(4166462-4166627)
chr3 (165-286)||(4150524-4150645)
chr3 (165-286)||(4166293-4166414)
chr3 (507-601)||(13485324-13485418)
chr3 (387-464)||(13490165-13490242)
chr3 (387-454)||(777419-777486)
chr3 (507-601)||(13490285-13490379)
chr3 (576-612)||(25597540-25597576)
[»] chr7 (1 HSPs)
chr7 (494-595)||(32414267-32414368)
[»] chr1 (1 HSPs)
chr1 (508-612)||(14288277-14288381)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 358 - 614
Target Start/End: Complemental strand, 4166221 - 4165965
Alignment:
Q  358 ctatgtttttcctaaaccaatagtcactgaagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa 457  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4166221 ctatgtttttcctaaaccaatagtcactgaagtacctcaagaatagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa 4166122  T
Q  458 gaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctgaac 557  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  4166121 gaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgtttgatagaagagagattgttattgttcccactgagtttctgaat 4166022  T
Q  558 aggattaccctgaaaatcaaagctacggagacttggagtagataactcaattttgca 614  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||    
T  4166021 aggattacccttaaaatcaaagctacggagacttggagtagataactcgattttgca 4165965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 358 - 611
Target Start/End: Complemental strand, 4150452 - 4150199
Alignment:
Q  358 ctatgtttttcctaaaccaatagtcactgaagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa 457  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4150452 ctatgtttttcctaaaccaatagtcactgaagtacctcaagaatagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa 4150353  T
Q  458 gaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctgaac 557  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  4150352 gaaccaagggatatttttcgatatatgacgggactgctacatcaatttttacatgtttgatagaagagagattgttattgttcccactgagtttctgaat 4150253  T
Q  558 aggattaccctgaaaatcaaagctacggagacttggagtagataactcaatttt 611  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| |||||    
T  4150252 aggattacccttaaaatcaaagctacggagacttggagtagataactcgatttt 4150199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 4150858 - 4150693
Alignment:
Q  9 cagagagagttgtaatgtatctacagacatttcataacaagagagactaagggaaataaaacaaaaaggccaaatcagaatgnnnnnnngttcttaaaag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||| |||||    
T  4150858 cagagagagttgtaatgtatctacagacatttcataacaagagagaccaagggaaataaaacaaaaaggccaaatcagaatgaaaaaaagttctgaaaag 4150759  T
Q  109 tttaatgcatatttaccttgtcaagtctatgatctcagcctttgccaagggtgactttttcagcaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  4150758 tttaatgcatatttaccttgtcaagtctatgatctcagcctttgctaagggtgacttttgcagcaa 4150693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 9 - 174
Target Start/End: Complemental strand, 4166627 - 4166462
Alignment:
Q  9 cagagagagttgtaatgtatctacagacatttcataacaagagagactaagggaaataaaacaaaaaggccaaatcagaatgnnnnnnngttcttaaaag 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||       ||||| |||||    
T  4166627 cagagagagttgtaatgtatctacagacatttcataacaagagagaccaagggaaataaaacaaaaaggccaaatcagaatgaaaaaaagttctgaaaag 4166528  T
Q  109 tttaatgcatatttaccttgtcaagtctatgatctcagcctttgccaagggtgactttttcagcaa 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  4166527 tttaatgcatatttaccttgtcaagtctatgatctcagcctttgctaagggtgacttttgcagcaa 4166462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 4150645 - 4150524
Alignment:
Q  165 ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactaagcaaagagtctatacaatgagggagggtgaatcatgatc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||    
T  4150645 ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactgagcaaagagtctatgcaacgagggagggtgaatcatgatc 4150546  T
Q  265 aatttaaagcaagtcatgtttt 286  Q
    | ||||| ||||||||||||||    
T  4150545 agtttaaggcaagtcatgtttt 4150524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 165 - 286
Target Start/End: Complemental strand, 4166414 - 4166293
Alignment:
Q  165 ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactaagcaaagagtctatacaatgagggagggtgaatcatgatc 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||    
T  4166414 ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactgagcaaagagtctatgcaacgagggagggtgaatcatgatc 4166315  T
Q  265 aatttaaagcaagtcatgtttt 286  Q
    | ||||| ||||||||||||||    
T  4166314 agtttaaggcaagtcatgtttt 4166293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 507 - 601
Target Start/End: Original strand, 13485324 - 13485418
Alignment:
Q  507 tacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagata 601  Q
    ||||||||| ||||||||||||||| | ||| |||||  ||||||||||| |||| |||| |||||||||||| | | |||||||||||||||||    
T  13485324 tacatgtttgatagaagagagattgctcttgatcccatggagtttctgaataggaataccatgaaaatcaaaggtgcagagacttggagtagata 13485418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 387 - 464
Target Start/End: Original strand, 13490165 - 13490242
Alignment:
Q  387 aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaagaaccaa 464  Q
    |||||||| |||||||| |||||| || ||||||||||| |||  || ||||||||||||||||||||  ||||||||    
T  13490165 aagtacctgaagagtagttgaagacacagtcaatgattcaatattagcaagctcaactagccagttgagcagaaccaa 13490242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 387 - 454
Target Start/End: Original strand, 777419 - 777486
Alignment:
Q  387 aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttga 454  Q
    ||||||||||||||||  |||||| ||||||| ||||||||||  || ||||||||||||||| ||||    
T  777419 aagtacctcaagagtatttgaagacactgtcagtgattcgatattagcaagctcaactagccaattga 777486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 507 - 601
Target Start/End: Original strand, 13490285 - 13490379
Alignment:
Q  507 tacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagata 601  Q
    ||||||||| ||||||||||||||  | ||| ||| |  ||||||||||| |||| |||| ||||| |||||| |||  ||||||||||||||||    
T  13490285 tacatgtttaatagaagagagatttctcttgctccgatggagtttctgaataggaataccatgaaactcaaaggtacaaagacttggagtagata 13490379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 576 - 612
Target Start/End: Complemental strand, 25597576 - 25597540
Alignment:
Q  576 aaagctacggagacttggagtagataactcaattttg 612  Q
    |||| |||| |||||||||||||||||||||||||||    
T  25597576 aaagttacgtagacttggagtagataactcaattttg 25597540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 494 - 595
Target Start/End: Complemental strand, 32414368 - 32414267
Alignment:
Q  494 ctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttgg 593  Q
    |||| |||||||| |||||||| ||||||||||||||| | ||| ||||   |||||||||||||||| |||||  ||||||||||||||  ||||||||    
T  32414368 ctacgtcaattttcacatgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttgg 32414269  T
Q  594 ag 595  Q
    ||    
T  32414268 ag 32414267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 508 - 612
Target Start/End: Original strand, 14288277 - 14288381
Alignment:
Q  508 acatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagataactcaa 607  Q
    |||||||| ||||||||||||||| | ||  |||||| |||||| |||| |||| |||||  ||||| |||| ||| |||||||||||| |||| |||||    
T  14288277 acatgtttgatagaagagagattgattttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttggagtggatagctcaa 14288376  T
Q  608 ttttg 612  Q
     ||||    
T  14288377 atttg 14288381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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