View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13424_low_6 (Length: 457)
Name: NF13424_low_6
Description: NF13424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13424_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 15 - 380
Target Start/End: Original strand, 3948041 - 3948416
Alignment:
| Q |
15 |
aacctgtgattttacctct--caataatgatcacacttttcttatttctctttcacactctatctacgtagtagttgtacaattttgttattgctcccac |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3948041 |
aacctgtgattttacctctctcaataatgatcacacttttcttatttctctttcacactctatctacgtagtagttgtacaattttgttattgctcccac |
3948140 |
T |
|
| Q |
113 |
attcttttgttactttctctcactttcatagtaaggcacagttatgtcatgcatctcttgttttctttttctacttttattgatataacatatatagcat |
212 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3948141 |
attcttttgttacttttgctcactttcataggaaggcacagttatgtcatgcatctcttgttttctttttctacttttattgatataacatatatagcat |
3948240 |
T |
|
| Q |
213 |
cagtactctg--------ttacatctaaccctcataaggccataagttacgttacatgaggaacctggttgctttactttcatccccttttcttttgctg |
304 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
3948241 |
cagtactctgttatatatttacatctcaccctcataaggcaataagttacgttacttgaggaacctggttgctttactttcatcccctattattttgctg |
3948340 |
T |
|
| Q |
305 |
attcttcctcaaatgcttggttgtttgcttgtactcttaaaatgagatgctttttgaactgaacaatgtgtttgat |
380 |
Q |
| |
|
||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
3948341 |
atttttccttaaatgtttggttgtttgcttgtactcttaaaatgagatgctttttgaaatgcacaatgtgtttgat |
3948416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 384 - 457
Target Start/End: Original strand, 3948690 - 3948763
Alignment:
| Q |
384 |
agctacaattttccttgattggataatttttctaacttctaattttttgtgagagatgaaaacaaaaagaaaat |
457 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3948690 |
agctacaattttctttgattggagaatttttctaacttctaattttttgtgagagatgaaaacaaaaagaaaat |
3948763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University