View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13424_low_7 (Length: 442)

Name: NF13424_low_7
Description: NF13424
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13424_low_7
NF13424_low_7
[»] chr7 (1 HSPs)
chr7 (70-432)||(30505766-30506126)
[»] chr1 (3 HSPs)
chr1 (65-380)||(28914194-28914509)
chr1 (70-368)||(26404854-26405152)
chr1 (70-368)||(26400556-26400854)
[»] chr6 (2 HSPs)
chr6 (70-368)||(7033625-7033923)
chr6 (70-368)||(7037925-7038223)
[»] chr5 (2 HSPs)
chr5 (70-368)||(17793045-17793343)
chr5 (70-368)||(17797343-17797641)
[»] chr4 (2 HSPs)
chr4 (70-368)||(1540923-1541221)
chr4 (70-368)||(1545221-1545519)


Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 70 - 432
Target Start/End: Complemental strand, 30506126 - 30505766
Alignment:
Q  70 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtttcctagtttctagttcagtttc 169  Q
    |||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30506126 tgttagctattgtgtttagaactgctgccacgtctgcagagtttattttacttctgttttgaatcttttaaatatgtttcctagtttctagttcagtttc 30506027  T
Q  170 ttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctgt 269  Q
    |||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30506026 ttttcctcctagttttcagcaagca--tttttttttagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctgt 30505929  T
Q  270 acttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaata 369  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30505928 acttttctatttgtacgtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaata 30505829  T
Q  370 acaacagtttctatgttgagcacgcagatggaaccgttgacccctccgtatcttcattccttt 432  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30505828 acaacagtttctatgttgagcacgcagatggaaccgttgacccctccgtatcttcattccttt 30505766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 65 - 380
Target Start/End: Original strand, 28914194 - 28914509
Alignment:
Q  65 gtttttgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttc 163  Q
    |||| ||||| ||||||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||||||| ||||| ||||||||||    
T  28914194 gtttctgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttc 28914293  T
Q  164 agtttcttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttcta 263  Q
    |||||  ||||||||| ||||||||||| |||          |||||||| ||||||||||||||||||||||||||||| | |||||||||||||||||    
T  28914294 agttttatttcctccttgttttcagcaatcagtttaattct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttcta 28914392  T
Q  264 ttctgtacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttac 363  Q
    |||||||||| |||||||||| ||||||||||||| | ||   ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  28914393 ttctgtacttttctatttgtacgtttgaattgaataagaattttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttac 28914492  T
Q  364 aaaataacaacagtttc 380  Q
    ||||| | |||||||||    
T  28914493 aaaatcataacagtttc 28914509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 70 - 368
Target Start/End: Original strand, 26404854 - 26405152
Alignment:
Q  70 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 168  Q
    ||||| ||||||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  26404854 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt 26404953  T
Q  169 cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg 268  Q
      ||||||||| ||||||||||| |||          |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  26404954 tatttcctccttgttttcagcaatcagtttaattct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctg 26405052  T
Q  269 tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat 368  Q
    ||||| |||||||||| ||||||||||||| | |||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26405053 tacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat 26405152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 70 - 368
Target Start/End: Original strand, 26400556 - 26400854
Alignment:
Q  70 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 168  Q
    ||||| ||||||||||||||||||||||||||| |   ||||| |||||| |||| |||||||||||||||||||||| ||||| |||||||||||||||    
T  26400556 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctattttgaatattttaaatatgttctcctaatttctagttcagttt 26400655  T
Q  169 cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg 268  Q
      ||||||||| ||||||||||| |||          |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  26400656 tatttcctccttgttttcagcaatcagtttaattct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctg 26400754  T
Q  269 tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat 368  Q
    ||||| |||||||||| ||||||||||||| | |||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26400755 tacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat 26400854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 70 - 368
Target Start/End: Original strand, 7033625 - 7033923
Alignment:
Q  70 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 168  Q
    ||||| ||||||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  7033625 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt 7033724  T
Q  169 cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg 268  Q
      ||||||||| ||||||||||| |||          |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  7033725 tatttcctccttgttttcagcaatcagtttaattct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctg 7033823  T
Q  269 tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat 368  Q
    ||||| |||||||||| ||||||||||||| | |||  |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7033824 tacttttctatttgtacgtttgaattgaataagaaatttacttttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat 7033923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 70 - 368
Target Start/End: Original strand, 7037925 - 7038223
Alignment:
Q  70 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 168  Q
    ||||| ||||||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  7037925 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt 7038024  T
Q  169 cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg 268  Q
      ||||||||| ||||||||||| |||          |||||||| | ||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  7038025 tatttcctccttgttttcagcaatcagtttaattct-agtattctattgtggcctaacttataggaacatgatattagtgggcagttattttctattctg 7038123  T
Q  269 tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat 368  Q
    ||||| |||||||||| ||||||||||||| | |||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7038124 tacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat 7038223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 70 - 368
Target Start/End: Original strand, 17793045 - 17793343
Alignment:
Q  70 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 168  Q
    ||||| ||||||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  17793045 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt 17793144  T
Q  169 cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg 268  Q
      ||||||||| ||||||||||| |||          |||||||| ||||||||||||||||||||||||||||| | |||||||||||| |||||||||    
T  17793145 tatttcctccttgttttcagcaatcagtttaactct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctg 17793243  T
Q  269 tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat 368  Q
    ||||| |||||||||| ||||||||||||| | |||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17793244 tacttttctatttgtacgtttgaattgaataacaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat 17793343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 70 - 368
Target Start/End: Original strand, 17797343 - 17797641
Alignment:
Q  70 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 168  Q
    ||||| ||||||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  17797343 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt 17797442  T
Q  169 cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg 268  Q
      ||||||||| ||||||||||| |||          |||||||| ||||||||||||||||||||||||||||| | |||||||||||| |||||||||    
T  17797443 tatttcctccttgttttcagcaatcagtttaactct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattgtctattctg 17797541  T
Q  269 tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat 368  Q
    ||||| |||||||||| ||||||||||||| | |||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  17797542 tacttttctatttgtacgtttgaattgaataacaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat 17797641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 165; Significance: 4e-88; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 70 - 368
Target Start/End: Original strand, 1540923 - 1541221
Alignment:
Q  70 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 168  Q
    ||||| ||||||||||||||||||||||||||| | | ||||| |||||| |||| |||||||||||||||||||||| ||||| ||||||||| |||||    
T  1540923 tgttaactattgtgtttagaactgctgccacgtttgttgagttcattttaattctattttgaatattttaaatatgttctcctaatttctagtttagttt 1541022  T
Q  169 cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg 268  Q
      ||||||||| ||||||||||| |||          |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  1541023 tatttcctccttgttttcagcaatcagtttaattct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctg 1541121  T
Q  269 tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat 368  Q
    ||||| |||||||||| ||||||||||||| | |||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1541122 tacttttctatttgtacgtttgaattgaataagaaatttactcttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat 1541221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 70 - 368
Target Start/End: Original strand, 1545221 - 1545519
Alignment:
Q  70 tgttagctattgtgtttagaactgctgccacgtctatggagtttattttacttctgttttgaatattttaaatatgtt-tcctagtttctagttcagttt 168  Q
    ||||| ||||||||||||||||||||||||||| |   ||||| |||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||    
T  1545221 tgttaactattgtgtttagaactgctgccacgtttgctgagttcattttaattctgttttgaatattttaaatatgttctcctaatttctagttcagttt 1545320  T
Q  169 cttttcctcctagttttcagcaagcagnnnnnnnnnnagtattctgtcgtggcctaacttataggaacatgatatcaatgggcagttattttctattctg 268  Q
      ||||||||| ||||||||||| |||          |||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  1545321 tatttcctccttgttttcagcaatcagtttaattct-agtattctatcgtggcctaacttataggaacatgatattagtgggcagttattttctattctg 1545419  T
Q  269 tacttctctatttgtaagtttgaattgaatgaaaaacatactcttcttccacttgttctagcaactacctttaatcttttcctctgcaactttacaaaat 368  Q
    ||||| |||||||||| ||||||||||||| | |||  |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1545420 tacttttctatttgtacgtttgaattgaataagaaatttacttttcttccacttgttctagcaaccacctttaatcttttcctctgcaactttacaaaat 1545519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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