View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13425_high_11 (Length: 505)

Name: NF13425_high_11
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13425_high_11
NF13425_high_11
[»] chr3 (3 HSPs)
chr3 (19-235)||(8525376-8525592)
chr3 (337-414)||(50630317-50630392)
chr3 (300-414)||(52138037-52138151)
[»] chr8 (4 HSPs)
chr8 (300-483)||(25984689-25984871)
chr8 (300-414)||(36566200-36566314)
chr8 (358-414)||(42855030-42855086)
chr8 (342-414)||(35094018-35094090)
[»] chr5 (3 HSPs)
chr5 (295-414)||(31503001-31503120)
chr5 (323-410)||(3095346-3095433)
chr5 (300-414)||(24177733-24177847)
[»] chr6 (7 HSPs)
chr6 (297-483)||(9369350-9369536)
chr6 (336-414)||(2208397-2208475)
chr6 (343-414)||(10864622-10864693)
chr6 (315-414)||(20428611-20428710)
chr6 (357-414)||(2681452-2681509)
chr6 (1-78)||(25520646-25520723)
chr6 (358-414)||(9705984-9706040)
[»] chr7 (5 HSPs)
chr7 (295-404)||(43793980-43794089)
chr7 (323-420)||(36870306-36870403)
chr7 (300-414)||(39907338-39907452)
chr7 (300-414)||(46356810-46356924)
chr7 (358-414)||(32629817-32629873)
[»] chr4 (5 HSPs)
chr4 (381-480)||(6937121-6937221)
chr4 (315-414)||(39707673-39707771)
chr4 (300-414)||(435441-435555)
chr4 (300-484)||(23907261-23907446)
chr4 (378-414)||(42037116-42037152)
[»] chr1 (5 HSPs)
chr1 (306-484)||(29173494-29173673)
chr1 (306-368)||(40418937-40418999)
chr1 (315-414)||(32405438-32405536)
chr1 (300-414)||(43241340-43241454)
chr1 (300-414)||(51441723-51441837)
[»] scaffold0286 (1 HSPs)
scaffold0286 (336-414)||(496-574)
[»] scaffold0606 (1 HSPs)
scaffold0606 (380-476)||(8837-8934)
[»] chr2 (5 HSPs)
chr2 (149-200)||(12251659-12251710)
chr2 (300-415)||(24584565-24584680)
chr2 (300-356)||(876424-876480)
chr2 (358-420)||(14769503-14769565)
chr2 (370-414)||(39287860-39287904)
[»] scaffold0113 (1 HSPs)
scaffold0113 (348-414)||(13265-13331)


Alignment Details
Target: chr3 (Bit Score: 182; Significance: 4e-98; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 8525376 - 8525592
Alignment:
Q  19 tgaaaactaagtgtggatgatattttaaggaacacaacgtctatatttatatccaaattggaaatacaatattgtcaaaaacaatatttagtgattgttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  8525376 tgaaaactaagtgtggatgatattttaaggaacacaacgtctatatttatatccaaattgaaaatacaatattttcaaaaacaatatttagtgattgttt 8525475  T
Q  119 tt-cttggtggaccaacacatcacaacataaataattgttaatatttctattggaatctatggctggagaatgtcgatccacaattgaaatatatgtgta 217  Q
    || ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||    
T  8525476 ttccttggtggaccaacacatcgcaacataaataattgttaatatttctattggaatctatggctcgagaatgtcgatgcacaattgaaatatat-tgta 8525574  T
Q  218 gagtcatcttaagatttt 235  Q
    ||||||||||||||||||    
T  8525575 gagtcatcttaagatttt 8525592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 414
Target Start/End: Original strand, 50630317 - 50630392
Alignment:
Q  337 taacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    |||||| ||| ||||||||| ||||| ||||| | |||| || ||||||  |||||| ||||||||||||||||||||    
T  50630317 taacacttttcttctctagggctttccacaaaatatctcgaggcactct--catatgccttctccaaatcaatgaaaa 50630392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 414
Target Start/End: Complemental strand, 52138151 - 52138037
Alignment:
Q  300 tcatatatatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttct 399  Q
    ||||| ||||| || ||||| | ||||||||| |  ||||| ||||| ||||| ||| ||||| ||||| ||||||  |  ||||||||||| | ||| |    
T  52138151 tcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctctcggtactctatcatacgcctttt 52138052  T
Q  400 ccaaatcaatgaaaa 414  Q
    |||||||||||||||    
T  52138051 ccaaatcaatgaaaa 52138037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 300 - 483
Target Start/End: Complemental strand, 25984871 - 25984689
Alignment:
Q  300 tcatatatatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttct 399  Q
    ||||| ||||| || |||||| |||||| ||| || ||||||| | | ||||||||| ||||| ||||| | | |  ||||||||||||||||| |||||    
T  25984871 tcatacatatccttgatagcttgaatattggcaaccctaacacttctcttctctagggctttccacaaaattttt--agacactctatcatatgccttct 25984774  T
Q  400 ccaaatcaatgaaaatcaagt-caagtacttttgagtcatttgataccgctccatcacacatcatagtaagtatattgcttccat 483  Q
    ||||||||||| ||| ||||| ||||| |||||||  |||||||||| ||||||||  || || |||||||||| ||||||||||    
T  25984773 ccaaatcaatggaaaccaagtgcaagtccttttgatccatttgatactgctccatcctacgtcgtagtaagtatgttgcttccat 25984689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 414
Target Start/End: Original strand, 36566200 - 36566314
Alignment:
Q  300 tcatatatatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttct 399  Q
    ||||| ||||| || ||||| | ||||||||| |  ||||| ||||| ||||| ||| ||||| ||||| ||||||  || ||||||||||| | ||| |    
T  36566200 tcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctctcgatactctatcatacgcctttt 36566299  T
Q  400 ccaaatcaatgaaaa 414  Q
    |||||||||||||||    
T  36566300 ccaaatcaatgaaaa 36566314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 414
Target Start/End: Original strand, 42855030 - 42855086
Alignment:
Q  358 ctttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    ||||| ||||| | |||| || |||||||||||||| ||||||||||||||||||||    
T  42855030 ctttccacaaaatatctctaggcactctatcatatgccttctccaaatcaatgaaaa 42855086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 414
Target Start/End: Original strand, 35094018 - 35094090
Alignment:
Q  342 cctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    ||||| ||||||||| ||||| |||||||||||  || || ||||||| |   ||||||||||||||||||||    
T  35094018 cctttcttctctagggctttccacaaagtctctttaggcattctatcacacaccttctccaaatcaatgaaaa 35094090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 295 - 414
Target Start/End: Original strand, 31503001 - 31503120
Alignment:
Q  295 ccccttcatatatatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgt 394  Q
    |||| ||||| ||||| || ||| |||||||||||||||| ||||||||||| ||||||||| |||||  |||| ||| || ||||| | ||||||||||    
T  31503001 ccccatcatacatatcctttataactcgaatataggccaccctaacacctttcttctctaggtctttcatcaaaatctttctagacaatttatcatatgt 31503100  T
Q  395 cttctccaaatcaatgaaaa 414  Q
    ||||||||||||||| ||||    
T  31503101 cttctccaaatcaataaaaa 31503120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 410
Target Start/End: Complemental strand, 3095433 - 3095346
Alignment:
Q  323 aatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatg 410  Q
    |||||||||||| |||||| |||| ||||| ||| ||||| ||||| |||||| |  ||||||||||||||| ||||| |||| ||||    
T  3095433 aatataggccaccctaacatctttcttctcgagggctttccacaaaatctctctaagcactctatcatatgtattctcgaaattaatg 3095346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 414
Target Start/End: Complemental strand, 24177847 - 24177733
Alignment:
Q  300 tcatatatatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttct 399  Q
    ||||| ||||| || ||||||| ||||||||| |  ||||| ||||| ||||| ||| ||||| ||||| ||||||  |  ||||||||||||| ||| |    
T  24177847 tcatacatatccttgatagctctaatataggcaatgctaacccctttcttctccagggctttccacaaaatctctctcggtactctatcatatgcctttt 24177748  T
Q  400 ccaaatcaatgaaaa 414  Q
     ||||||||||||||    
T  24177747 tcaaatcaatgaaaa 24177733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 297 - 483
Target Start/End: Original strand, 9369350 - 9369536
Alignment:
Q  297 ccttcatatatatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtct 396  Q
    |||||||| ||||| || ||| |||||||||||| ||| ||||||||||| ||||||||| ||||||||||| ||||   || | ||||| |||||| ||    
T  9369350 ccttcatacatatccttgatatctcgaatataggtcaccctaacacctttcttctctagggctttctacaaaatctcgttaggctctctaccatatgact 9369449  T
Q  397 tctccaaatcaatgaaaa-tcaagtcaagtacttttgagtcatttgataccgctccatcacacatcatagtaagtatattgcttccat 483  Q
    ||| |||||||||||||| | ||  ||||| | ||||  ||||| | || || || ||||||| | ||||||||||||||||||||||    
T  9369450 tcttcaaatcaatgaaaactaaatgcaagt-cctttggttcattcggtatcgttcgatcacacgttatagtaagtatattgcttccat 9369536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 414
Target Start/End: Original strand, 2208397 - 2208475
Alignment:
Q  336 ctaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    |||||| |||| ||||||||| ||||| | |||||||||| ||||| |||||||||   ||||||||||||||||||||    
T  2208397 ctaacatctttcttctctaggcctttccaaaaagtctctctagacattctatcatacaccttctccaaatcaatgaaaa 2208475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 414
Target Start/End: Original strand, 10864622 - 10864693
Alignment:
Q  343 ctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    |||||||||||| ||| ||||||||| | |||| ||||||| ||| |||||| |||| |||| |||||||||    
T  10864622 ctttattctctatgacattctacaaactatctctagacactatattatatgtattcttcaaaacaatgaaaa 10864693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 315 - 414
Target Start/End: Original strand, 20428611 - 20428710
Alignment:
Q  315 atagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    ||||||| ||||||||| |  || || ||||| ||||| ||| ||||| ||||| |||||| ||  ||||||||||| | ||||| ||||||||||||||    
T  20428611 atagctctaatataggcaatcctcacccctttcttctccagggctttccacaaaatctctctaggtactctatcatacgccttctacaaatcaatgaaaa 20428710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 414
Target Start/End: Original strand, 2681452 - 2681509
Alignment:
Q  357 actttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    ||||||||||||  |||||  ||||| |||||||| | ||||||||||||||||||||    
T  2681452 actttctacaaaacctctctcgacacactatcatacgccttctccaaatcaatgaaaa 2681509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 25520723 - 25520646
Alignment:
Q  1 atgtgaatgaagatcaattgaaaactaagtgtggatgatattttaaggaacacaacgtctatatttatatccaaattg 78  Q
    ||||||||||| | |||| ||||| ||||||||||||| ||   |||| |||||||||  ||||||||| ||||||||    
T  25520723 atgtgaatgaaaaacaatagaaaagtaagtgtggatgaaatgccaagggacacaacgtaaatatttatagccaaattg 25520646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 414
Target Start/End: Complemental strand, 9706040 - 9705984
Alignment:
Q  358 ctttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    ||||| ||||| |||||| ||  ||||||||||| | ||||||||||||||||||||    
T  9706040 ctttccacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaa 9705984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 404
Target Start/End: Original strand, 43793980 - 43794089
Alignment:
Q  295 ccccttcatatatatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgt 394  Q
    |||||||||| ||||| || ||||||| |||||||||||| ||||||||||| ||||||||  ||||| ||||| || ||| || ||||||||||||||     
T  43793980 ccccttcatacatatccttgatagctcaaatataggccaccctaacacctttcttctctagagctttccacaaaatcactctaggcactctatcatatgc 43794079  T
Q  395 cttctccaaa 404  Q
    || |||||||    
T  43794080 ctcctccaaa 43794089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 323 - 420
Target Start/End: Original strand, 36870306 - 36870403
Alignment:
Q  323 aatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaatcaagt 420  Q
    ||||||||| |  ||||| |||||||| || ||| ||||| ||||| |||||| || |||||||||||| | ||||||||||||||||||||| ||||    
T  36870306 aatataggcaatcctaacccctttattttccagggctttccacaaaatctctctaggcactctatcatacgccttctccaaatcaatgaaaattaagt 36870403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 414
Target Start/End: Original strand, 39907338 - 39907452
Alignment:
Q  300 tcatatatatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttct 399  Q
    ||||| ||||| || ||||| | ||||||||| |  ||||| ||||| ||||| ||| ||||| ||||| ||||||  |  ||||||||||| | ||| |    
T  39907338 tcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctctcggtactctatcatacgcctttt 39907437  T
Q  400 ccaaatcaatgaaaa 414  Q
    |||||||||||||||    
T  39907438 ccaaatcaatgaaaa 39907452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 414
Target Start/End: Original strand, 46356810 - 46356924
Alignment:
Q  300 tcatatatatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttct 399  Q
    ||||| ||||| || ||||| | ||||||||| |  ||||| ||||| ||||| ||| ||||| ||||| ||||||  |  ||||||||||| | ||| |    
T  46356810 tcatacatatccttgatagccctaatataggcaattctaacccctttcttctccagggctttccacaaaatctctctcggtactctatcatacgcctttt 46356909  T
Q  400 ccaaatcaatgaaaa 414  Q
    |||||||||||||||    
T  46356910 ccaaatcaatgaaaa 46356924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 414
Target Start/End: Complemental strand, 32629873 - 32629817
Alignment:
Q  358 ctttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    ||||| ||||| |||||| ||  ||||||||||| | ||||||||||||||||||||    
T  32629873 ctttccacaaaatctctctaggtactctatcatacgccttctccaaatcaatgaaaa 32629817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 381 - 480
Target Start/End: Complemental strand, 6937221 - 6937121
Alignment:
Q  381 actctatcatatgtcttctccaaatcaatgaaaatcaagt-caagtacttttgagtcatttgataccgctccatcacacatcatagtaagtatattgctt 479  Q
    ||||||||||||||||||||||||||||| ||||| |||| ||| | |||||||  |||| ||||  |||||||||||| || |||||||| ||||||||    
T  6937221 actctatcatatgtcttctccaaatcaataaaaattaagtgcaactccttttgatacattggatattgctccatcacacgtcgtagtaagtctattgctt 6937122  T
Q  480 c 480  Q
    |    
T  6937121 c 6937121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 414
Target Start/End: Complemental strand, 39707771 - 39707673
Alignment:
Q  315 atagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    ||||||| ||||||||| |  | ||| ||||| ||||| ||||||||| |||||  ||||| || |||||||||||| ||||||||||||||||||||||    
T  39707771 atagctctaatataggcaatccaaacccctttcttctccaggactttc-acaaaacctctctaggcactctatcatacgtcttctccaaatcaatgaaaa 39707673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 300 - 414
Target Start/End: Complemental strand, 435555 - 435441
Alignment:
Q  300 tcatatatatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttct 399  Q
    ||||| ||||| || ||||| | ||||||||| |  ||||| ||||| ||||| ||| ||||| ||||| ||||||  |  ||||||||||| ||||| |    
T  435555 tcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagggctttccacaaaatctctctcggtactctatcatacgtctttt 435456  T
Q  400 ccaaatcaatgaaaa 414  Q
    |||||||||||||||    
T  435455 ccaaatcaatgaaaa 435441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 300 - 484
Target Start/End: Original strand, 23907261 - 23907446
Alignment:
Q  300 tcatatatatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttct 399  Q
    ||||| ||||| || ||||||| ||||||| | |  ||||| ||||| ||||| ||| ||||| ||||| ||||||  |  ||||||||||| | ||| |    
T  23907261 tcatacatatccttgatagctctaatatagacaatcctaacccctttcttctccagggctttccacaaaatctctcttggtactctatcatacgcctttt 23907360  T
Q  400 ccaaatcaatgaaaatcaagt-caagtacttttgagtcatttgataccgctccatcacacatcatagtaagtatattgcttccata 484  Q
    |||||||||||||||  |||| |||||  |||| |  | || |||| ||||||||||| | ||  |||||||| ||||||||||||    
T  23907361 ccaaatcaatgaaaactaagtgcaagtcttttttatccgttcgatatcgctccatcacgcgtcgaagtaagtagattgcttccata 23907446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 414
Target Start/End: Complemental strand, 42037152 - 42037116
Alignment:
Q  378 gacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    |||||| ||||||||||||||||||||||||||||||    
T  42037152 gacactatatcatatgtcttctccaaatcaatgaaaa 42037116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 306 - 484
Target Start/End: Original strand, 29173494 - 29173673
Alignment:
Q  306 atatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttctccaaat 405  Q
    |||||||| ||||||| ||||||||| |  ||||| ||| | ||||||||| ||||| |||||  |||||  | |||||||||||| | |||||||||||    
T  29173494 atatcattgatagctctaatataggcaatcctaacccctctcttctctaggcctttccacaaaacctctctcggcactctatcatacgccttctccaaat 29173593  T
Q  406 caatgaaaatcaagt-caagtacttttgagtcatttgataccgctccatcacacatcatagtaagtatattgcttccata 484  Q
    |||| ||||  |||| |||||  |||| |  | | ||||| ||||||||||||| ||  |||||||| ||||||||||||    
T  29173594 caataaaaactaagtgcaagtcttttttatccgtctgatatcgctccatcacacgtcgaagtaagtaaattgcttccata 29173673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 40418999 - 40418937
Alignment:
Q  306 atatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaa 368  Q
    ||||| |||||||||| |||||||||||| ||||||||||| ||||||||| ||||| |||||    
T  40418999 atatccttaatagctctaatataggccaccctaacacctttcttctctagggctttccacaaa 40418937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 315 - 414
Target Start/End: Original strand, 32405438 - 32405536
Alignment:
Q  315 atagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    ||||||| |||||| || |  ||||| ||||| ||||||| | ||||| ||||| |||||| ||||||||||||||| | ||| ||||||||||||||||    
T  32405438 atagctctaatataagcaattctaacccctttcttctctatggctttccacaaaatctctctagacactctatcatacg-cttttccaaatcaatgaaaa 32405536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 414
Target Start/End: Original strand, 43241340 - 43241454
Alignment:
Q  300 tcatatatatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttct 399  Q
    ||||| ||||| || ||||| | ||||||||| |  ||||| ||||| ||||| ||  ||||| ||||| ||||||  |  ||||||||||| ||||| |    
T  43241340 tcatacatatccttgatagccctaatataggcaatcctaacccctttcttctccagagctttccacaaaatctctctcggtactctatcatacgtctttt 43241439  T
Q  400 ccaaatcaatgaaaa 414  Q
    |||||||||||||||    
T  43241440 ccaaatcaatgaaaa 43241454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 300 - 414
Target Start/End: Original strand, 51441723 - 51441837
Alignment:
Q  300 tcatatatatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttct 399  Q
    ||||| ||||| || ||||| | ||||||||| |  ||||| | ||| ||||| ||| ||||| ||||| ||||||| || ||||||||||| |  || |    
T  51441723 tcatacatatccttgatagccctaatataggcaattctaacccatttcttctccagggctttccacaaaatctctcacgatactctatcatacgcttttt 51441822  T
Q  400 ccaaatcaatgaaaa 414  Q
    |||||||||||||||    
T  51441823 ccaaatcaatgaaaa 51441837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 336 - 414
Target Start/End: Original strand, 496 - 574
Alignment:
Q  336 ctaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    |||||| |||| ||||||||| ||||| | |||||||||| ||||| |||||||||   ||||||||||||||||||||    
T  496 ctaacatctttcttctctaggcctttccaaaaagtctctctagacattctatcatacaccttctccaaatcaatgaaaa 574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 380 - 476
Target Start/End: Complemental strand, 8934 - 8837
Alignment:
Q  380 cactctatcatatgtcttctccaaatcaatgaaaatcaag-tcaagtacttttgagtcatttgataccgctccatcacacatcatagtaagtatattg 476  Q
    |||||||||||||| ||||| ||||||||||||||  |||  ||||| |||||||  ||||  |||||||||| ||||||||  ||||||||||||||    
T  8934 cactctatcatatgacttctacaaatcaatgaaaactaagcgcaagtccttttgatccattctataccgctccttcacacattgtagtaagtatattg 8837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 149 - 200
Target Start/End: Original strand, 12251659 - 12251710
Alignment:
Q  149 ataattgttaatatttctattggaatctatggctggagaatgtcgatccaca 200  Q
    |||||||||| |||||||||| |||||||||| ||||||||||| |||||||    
T  12251659 ataattgttactatttctatttgaatctatggatggagaatgtctatccaca 12251710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 300 - 415
Target Start/End: Original strand, 24584565 - 24584680
Alignment:
Q  300 tcatatatatcattaatagctcgaatataggccacactaacacctttattctctaggactttctacaaagtctctcaagacactctatcatatgtcttct 399  Q
    ||||| ||||| || |||||||  |||||||| |  ||||| ||||| ||||| |||  |||| ||||| ||||||  || ||||||||||| | |||||    
T  24584565 tcatacatatccttgatagctctgatataggcaatcctaacccctttcttctccagggttttccacaaaatctctctggaaactctatcatacgccttct 24584664  T
Q  400 ccaaatcaatgaaaat 415  Q
    ||||||||||||||||    
T  24584665 ccaaatcaatgaaaat 24584680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 356
Target Start/End: Complemental strand, 876480 - 876424
Alignment:
Q  300 tcatatatatcattaatagctcgaatataggccacactaacacctttattctctagg 356  Q
    ||||| ||||| || |||||||||||||||| ||| |||||||||||||||| ||||    
T  876480 tcatacatatccttgatagctcgaatatagggcaccctaacacctttattctatagg 876424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 358 - 420
Target Start/End: Complemental strand, 14769565 - 14769503
Alignment:
Q  358 ctttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaatcaagt 420  Q
    ||||| ||||| |||||| ||  ||| ||||||| |||||||||||||||||||||| |||||    
T  14769565 ctttccacaaaatctctctagctactttatcatacgtcttctccaaatcaatgaaaaccaagt 14769503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 414
Target Start/End: Original strand, 39287860 - 39287904
Alignment:
Q  370 tctctcaagacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    |||||| || |||| ||||| ||||||||||||||||||||||||    
T  39287860 tctctctagccactttatcacatgtcttctccaaatcaatgaaaa 39287904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 348 - 414
Target Start/End: Original strand, 13265 - 13331
Alignment:
Q  348 ttctctaggactttctacaaagtctctcaagacactctatcatatgtcttctccaaatcaatgaaaa 414  Q
    ||||| ||||||||| ||||| |||||| ||  ||||||||||| | ||||||||||||||||||||    
T  13265 ttctccaggactttccacaaaatctctctaggaactctatcatacgccttctccaaatcaatgaaaa 13331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University