View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13425_high_12 (Length: 492)
Name: NF13425_high_12
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_high_12 |
 | |
|
| [»] scaffold0097 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 214 - 470
Target Start/End: Complemental strand, 23087124 - 23086868
Alignment:
| Q |
214 |
gtaaactttaaaacttgtaaatggtataagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgt |
313 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
23087124 |
gtaaattttaaaacttgtaaatggaataagagaacttacttccaacaagtcgaaaccaagctttcaacataatccatggcagaaaaccaacacagtttgt |
23087025 |
T |
|
| Q |
314 |
tggaaattctaattctttctactctctcgtctctccgattatagataattgcccggtcatcttcagaatttgccaatataagtgtatgtccatccgtaga |
413 |
Q |
| |
|
|||||||| ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23087024 |
tggaaattttaattctctctactcgctcatctctccgattatagataattgcccggtcatcttcagaatttgccaatataagtgtatctccatccgtaga |
23086925 |
T |
|
| Q |
414 |
aaggtacaatggtaacaatggaataccacattcagtgagtccatagaaattcaagtt |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23086924 |
aaggtacaatggtaacaatggaataccacattcagtgagtccataaaaattcaagtt |
23086868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 14 - 163
Target Start/End: Complemental strand, 23087288 - 23087136
Alignment:
| Q |
14 |
atatctccaatttcattatcatcatatac---catacttgcgtgtacggagtatgtgcttggagtcagatttgcagatctgtaattcaagaaatatccat |
110 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23087288 |
atatctccaatttcattatcatcatctactaccatacttgcgtgtacggagtatgtgcttggagtcagatttgcagatctgtaattcaagaaatatccat |
23087189 |
T |
|
| Q |
111 |
tagtctagaagtaaaacagcaaaacataaaacttacaattaaacaacaaaaca |
163 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23087188 |
tagtctagaagtaatacagcaaaacataaaacttacaattaaacaacaaaaca |
23087136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 91; Significance: 7e-44; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 241 - 431
Target Start/End: Original strand, 19746422 - 19746612
Alignment:
| Q |
241 |
aagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgttggaaattctaattctttctactctct |
340 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||| |||| ||||| | ||||||||||||||||||| |||||||| ||| ||| |||||||||| |
|
|
| T |
19746422 |
aagagaacttacttccaatgagtcgaaatcaagctttcagcatagtccattgcagaaaaccaacacagtttgctggaaattttaactctctctactctct |
19746521 |
T |
|
| Q |
341 |
cgtctctccgattatagataattgcccggtcatcttcagaatttgccaatataagtgtatgtccatccgtagaaaggtacaatggtaacaa |
431 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| ||||||||||||| ||||||| ||| | |||||||||||| ||| ||||| |
|
|
| T |
19746522 |
tatctctcagattatagataattgctcggtcatcttcataatttgccaatatcagtgtatcgtcattcttagaaaggtacagtggcaacaa |
19746612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 232 - 444
Target Start/End: Complemental strand, 5979372 - 5979160
Alignment:
| Q |
232 |
aaatggtataagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgttggaaattctaattcttt |
331 |
Q |
| |
|
||||| || |||||||||||||||||| |||||||||||||||||| | ||||| |||| || ||||||| | |||||||||||||| |||||| | |
|
|
| T |
5979372 |
aaatgatagaagagaacttacttccaatgagtcgaaaccaagctttcaatgtaatcaatggcggagaaccaacttattttgttggaaattccaattctct |
5979273 |
T |
|
| Q |
332 |
ctactctctcgtctctccgattatagataattgcccggtcatcttcagaatttgccaatataagtgtatgtccatccgtagaaaggtacaatggtaacaa |
431 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | | | |||| | ||||| ||| || | ||||| ||||| | | ||||||||||| |||||||| |
|
|
| T |
5979272 |
ctactctcttatctctccgattatagataattactcttttgtctttatcatttgtcaagatcaatgtatctccattcttcgaaaggtacaaaggtaacaa |
5979173 |
T |
|
| Q |
432 |
tggaataccacat |
444 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
5979172 |
tggagtatcacat |
5979160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 241 - 364
Target Start/End: Original strand, 34861623 - 34861746
Alignment:
| Q |
241 |
aagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgttggaaattctaattctttctactctct |
340 |
Q |
| |
|
|||||||||||||||||| ||||| ||| |||||||| || |||||||||| ||| |||||| | || ||||||||||||| ||| |||||||||| |
|
|
| T |
34861623 |
aagagaacttacttccaaggagtcggaactaagctttcaacgtaatccatggcagagaaccaatgaatttcgttggaaattctagctctatctactctct |
34861722 |
T |
|
| Q |
341 |
cgtctctccgattatagataattg |
364 |
Q |
| |
|
|| ||| |||||||||||||| |
|
|
| T |
34861723 |
tatccctcttattatagataattg |
34861746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 223 - 363
Target Start/End: Complemental strand, 36340469 - 36340329
Alignment:
| Q |
223 |
aaaacttgtaaatggtataagagaacttacttccaacaagtcgaaaccaagctttccacataatccatggaagaaaaccaacacagtttgttggaaattc |
322 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||| | || ||| |||| || | || ||||||||||| |
|
|
| T |
36340469 |
aaaaattgtaaatcttagaagagaacttacttccaacgtgtcgaaaccaagctttcaacataatcaaaggcagaggaccagcatatttcgttggaaattc |
36340370 |
T |
|
| Q |
323 |
taattctttctactctctcgtctctccgattatagataatt |
363 |
Q |
| |
|
|| || | |||||||||| |||||| ||||||| |||||| |
|
|
| T |
36340369 |
tagttttctctactctcttatctctctgattatatataatt |
36340329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 63 - 128
Target Start/End: Complemental strand, 24022849 - 24022785
Alignment:
| Q |
63 |
atgtgcttggagtcagatttgcagatctgtaattcaagaaatatccattagtctagaagtaaaaca |
128 |
Q |
| |
|
||||||||||||| | ||||||| || |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24022849 |
atgtgcttggagttggtcttgcagacctataattcaa-aaatatccattagtctagaagtaaaaca |
24022785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 22524938 - 22524983
Alignment:
| Q |
244 |
agaacttacttccaacaagtcgaaaccaagctttccacataatcca |
289 |
Q |
| |
|
||||||||||| ||| |||| |||||||||||||| |||||||||| |
|
|
| T |
22524938 |
agaacttactttcaagaagttgaaaccaagctttcaacataatcca |
22524983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 142
Target Start/End: Original strand, 11338232 - 11338281
Alignment:
| Q |
92 |
taattcaagaaatatccattagtctagaagtaaaacagcaaaacataaaac |
142 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
11338232 |
taattcaa-aaatatccataagactagaagtaaaacaacaaaacataaaac |
11338281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 11356785 - 11356844
Alignment:
| Q |
82 |
tgcagatctgtaattcaagaaatatccattagtctagaagtaaaacagcaaaacataaaac |
142 |
Q |
| |
|
|||||| || |||||||| ||||||| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
11356785 |
tgcagacctataattcaa-aaatatcaattaggttagaagtaaaacaacaaaacataaaac |
11356844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0097 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0097
Description:
Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 16131 - 16172
Alignment:
| Q |
245 |
gaacttacttccaacaagtcgaaaccaagctttccacataat |
286 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
16131 |
gaacttactttcaacaagttgaaaccaagctttcgacataat |
16172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 20712292 - 20712333
Alignment:
| Q |
245 |
gaacttacttccaacaagtcgaaaccaagctttccacataat |
286 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
20712292 |
gaacttactttcaacaagttgaaaccaagctttcgacataat |
20712333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University