View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_high_13 (Length: 484)
Name: NF13425_high_13
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 11 - 467
Target Start/End: Complemental strand, 37111930 - 37111474
Alignment:
| Q |
11 |
cataggcaacgccgcagtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaac |
110 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111930 |
cataggcaacgccgcggtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaac |
37111831 |
T |
|
| Q |
111 |
cctgactatggccatcttgaccctattgctattgcagctctagtagccataacagcccttgcagtttacagcaccaaaggctcttccatcttcaactaca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111830 |
cctgactatggccatcttgaccctattgctattgcagctctagtagccatcacagcccttgcagtttacagcaccaaaggctcttccatcttcaactaca |
37111731 |
T |
|
| Q |
211 |
tagccacactcttacacatggctgtcattatcttcatagttatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111730 |
tagccacactcttacacatggctgtcattatcttcatagttatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggct |
37111631 |
T |
|
| Q |
311 |
tcacggtatggtcaatgcttcagctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagac |
410 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111630 |
tcacggtatggtcaatgcttccgctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagac |
37111531 |
T |
|
| Q |
411 |
attccaattggtctagttggttcaatgacgattacaacaataatctattgcttactg |
467 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37111530 |
attccaattggtctagttggttcaatgacgattacaacaataatttattgcttactg |
37111474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 466
Target Start/End: Complemental strand, 37120181 - 37119730
Alignment:
| Q |
15 |
ggcaacgccgcagtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaaccctg |
114 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
37120181 |
ggcaacgcggcggtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaatcctg |
37120082 |
T |
|
| Q |
115 |
actatggccatcttgaccctattgctattgcagctctagtagccataacagcccttgcagtttacagcaccaaaggctcttccatcttcaactacatagc |
214 |
Q |
| |
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| |||||||||||||||||||||||||||| ||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37120081 |
attatggccatcttgaccctattgctattggagccctagtagccatcacagctcttgcagtttacagcaccaaaggttcttccatcttcaactacatagc |
37119982 |
T |
|
| Q |
215 |
cacactcttacacatggctgtcattatcttcatagttatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggcttcac |
314 |
Q |
| |
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|||| | || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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|
| T |
37119981 |
cacaatgttccacatggctgtcattatcttcatagtaatcgccggtctaatcaaagccaaacccgaaaacttcaatgacttcactcctttcgggttgcat |
37119882 |
T |
|
| Q |
315 |
ggtatggtcaatgcttcagctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattc |
414 |
Q |
| |
|
|| ||||||| | |||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
37119881 |
ggaatggtcagttcttcggctgttcttttctttgcttatattggctttgatgctgtttcaaccatggctgaagaaactaaaaaccctggtagagacattc |
37119782 |
T |
|
| Q |
415 |
caattggtctagttggttcaatgacgattacaacaataatctattgcttact |
466 |
Q |
| |
|
| || ||||||||||| |||||||||||||||||| ||| ||||||||||| |
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|
| T |
37119781 |
ctatcggtctagttggatcaatgacgattacaacagcaatatattgcttact |
37119730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 37136084 - 37136197
Alignment:
| Q |
27 |
gtagctcgatcatggacctcctattttgccaccctctgcaacaaaaaccctgatgattttcgtataatagttcacaatatgaaccctgactatggccatc |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| | ||||||||||||||||| ||||| |||| |
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|
| T |
37136084 |
gtagctcgatcatggacctcctattttgccaccctctgcaacaaaaatcctaacgattttcgtataatattccacaatatgaaccctgattatggtcatc |
37136183 |
T |
|
| Q |
127 |
ttgaccctattgct |
140 |
Q |
| |
|
|||||||||||||| |
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|
| T |
37136184 |
ttgaccctattgct |
37136197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 333 - 437
Target Start/End: Original strand, 37136390 - 37136494
Alignment:
| Q |
333 |
gctgtacttttctttgcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctagttggtt |
432 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||| || ||||| ||||| || ||||| || |||||||| ||||||||||| |||||||| || || | |
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| T |
37136390 |
gctgttcttttctttgcttacataggctttgatgcagtgtcaactatggccgaggaaactaaaaaccctggcagagacattcctattggtcttgtaggat |
37136489 |
T |
|
| Q |
433 |
caatg |
437 |
Q |
| |
|
||||| |
|
|
| T |
37136490 |
caatg |
37136494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 449
Target Start/End: Original strand, 10680912 - 10681013
Alignment:
| Q |
348 |
gcttatgttggctttgatgctgtttcaaccatggctgaagaaaccaagaaccctggtagagacattccaattggtctagttggttcaatgacgattacaa |
447 |
Q |
| |
|
||||||||||| || ||||| ||||| || |||||||| ||||| ||||| ||||| | ||| || || ||||||||| | || |||||||| |||||| |
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|
| T |
10680912 |
gcttatgttggattcgatgcagtttcgacaatggctgaggaaacgaagaatcctggaaaagatatccctattggtctaataggatcaatgacacttacaa |
10681011 |
T |
|
| Q |
448 |
ca |
449 |
Q |
| |
|
|| |
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|
| T |
10681012 |
ca |
10681013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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