View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13425_high_15 (Length: 481)

Name: NF13425_high_15
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13425_high_15
NF13425_high_15
[»] chr7 (3 HSPs)
chr7 (12-96)||(22045992-22046076)
chr7 (403-463)||(22046407-22046467)
chr7 (185-275)||(22046167-22046258)


Alignment Details
Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 22045992 - 22046076
Alignment:
Q  12 catcatcatctgaaaatgtcttgctgtggtggaaactgtggttgtggaagtgcctgcaaatgcggcaatggctgtggagggtgag 96  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22045992 catcatcatctgaaaatgtcttgctgtggtggaaactgtggctgtggaagtgcctgcaaatgcggcaatggctgtggagggtgag 22046076  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 403 - 463
Target Start/End: Original strand, 22046407 - 22046467
Alignment:
Q  403 catggaaaacaaattgtgttttaacactttctctcatgttggtaaaattctgatctgatca 463  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22046407 catggaaaacaaattgtgttttaacactttctctcatgttggtaaaattgtgatctgatca 22046467  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 185 - 275
Target Start/End: Original strand, 22046167 - 22046258
Alignment:
Q  185 gtgggtgagggagattgtgatcacacannnnnnnnn-aaaactcggtatgtgatcaatcagatattgaagagatcaattccaccgtccacta 275  Q
    |||||||||||||||||||||||||||          |||||||||||||||||||||||||||  || ||||||||||| |||||||||||    
T  22046167 gtgggtgagggagattgtgatcacacattttttttttaaaactcggtatgtgatcaatcagataccgaggagatcaattctaccgtccacta 22046258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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