View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13425_high_17 (Length: 456)
Name: NF13425_high_17
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_high_17 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Original strand, 15214311 - 15214737
Alignment:
| Q |
9 |
atgaagggcataatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaa |
108 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15214311 |
atgaaggatataatagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaa |
15214410 |
T |
|
| Q |
109 |
cattcaggaaatcgctattggtgggttgtttcttcataacaggagagcaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtc |
208 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15214411 |
cattcaggaaatcgctattggtgggttatttcttcatgacaggagaacaatattaaatatgtgcttataaattactgtaattagcaatataagagatgtc |
15214510 |
T |
|
| Q |
209 |
catttgagttagcaacaggatcataagaaaggatcaagtattccattgcaaaatttaaacatgacataccaaaaagtaatggagaagttagaagcaaaca |
308 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15214511 |
catttgagttagcaacatgatcataagaaaggatcaagtattccattg---aatttaaacatgacataccaaaaagtgatggagaagttagaagcaaaca |
15214607 |
T |
|
| Q |
309 |
gtgtcattgaggggcctttctctgaagaattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttgnnnnnnnat |
408 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
15214608 |
gtgtcattgaggggcctttctctgaacaattgtttaataaattgtgtagaactaaaccattcaattgtgaaaaatagaatggaagcagttgtttttttat |
15214707 |
T |
|
| Q |
409 |
gattgtttctgcaactgtgagagagagaaa |
438 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |
|
|
| T |
15214708 |
gattgtttctgcaactgtgagaaagagaaa |
15214737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Original strand, 15253530 - 15253956
Alignment:
| Q |
9 |
atgaagggcataatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaa |
108 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15253530 |
atgaaggatataatagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaa |
15253629 |
T |
|
| Q |
109 |
cattcaggaaatcgctattggtgggttgtttcttcataacaggagagcaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtc |
208 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15253630 |
cattcaggaaatcgctattggtgggttatttcttcatgacaggagaacaatattaaatatgtgcttataaattactgtaattagcaatataagagatgtc |
15253729 |
T |
|
| Q |
209 |
catttgagttagcaacaggatcataagaaaggatcaagtattccattgcaaaatttaaacatgacataccaaaaagtaatggagaagttagaagcaaaca |
308 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
15253730 |
catttgagttagcaacatgatcataagaaaggatcaagtattccattg---aatttaaacatgacataccaaaaagtgatggagaagttagaagcaaaca |
15253826 |
T |
|
| Q |
309 |
gtgtcattgaggggcctttctctgaagaattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttgnnnnnnnat |
408 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
|
|
| T |
15253827 |
gtgtcattgaggggcctttctctgaacaattgtttaataaattgtgtagaactaaaccattcaattgtgaaaaatagaatggaagcagttgtttttttat |
15253926 |
T |
|
| Q |
409 |
gattgtttctgcaactgtgagagagagaaa |
438 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |
|
|
| T |
15253927 |
gattgtttctgcaactgtgagaaagagaaa |
15253956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 336 - 438
Target Start/End: Complemental strand, 7043681 - 7043579
Alignment:
| Q |
336 |
aattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttgnnnnnnnatgattgtttctgcaactgtgagagagag |
435 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||| || ||||||||||||| | ||||| |||| |
|
|
| T |
7043681 |
aattgtttaataaattgtgtagaagtaaaccatgcaattgtgagaaatagaatggaagcaattgttttcttataattgtttctgcaattttgagaaagag |
7043582 |
T |
|
| Q |
436 |
aaa |
438 |
Q |
| |
|
||| |
|
|
| T |
7043581 |
aaa |
7043579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Complemental strand, 22603587 - 22603158
Alignment:
| Q |
9 |
atgaagggcataatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaa |
108 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22603587 |
atgaaggatataatagaaacaatggataaatataaaatcactaaagaattgtttattgcactgaaacaaaaatcaaaagaaaaatgcatgcaccatggaa |
22603488 |
T |
|
| Q |
109 |
cattcaggaaatcgctattggtgggttgtttcttcataacaggagagcaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtc |
208 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
22603487 |
cactcaggaaaccgctattggtgggttgtttcttcatgacaggagagcaatattaagtatgtgcttataaatttctgtaattagcaatataagagatgtc |
22603388 |
T |
|
| Q |
209 |
catttgagttagcaacaggatcataagaaaggatcaagtattccattgcaaaatttaaacatgacataccaaaaagtaatggagaagttagaagcaaaca |
308 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
22603387 |
catttgagttagcaacaagatcataagaaaggatcaagtattccattgcaaaatttaaacatgacgtaccaaaaagtgatggagaagttagaagcaaacg |
22603288 |
T |
|
| Q |
309 |
gtgtcattgaggggcctttctctgaagaattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttgnnnnnnnat |
408 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
22603287 |
gtgtcattgaggggcctttctctgaataattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttgtttttttat |
22603188 |
T |
|
| Q |
409 |
gattgtttctgcaactgtgagagagagaaa |
438 |
Q |
| |
|
|||||||| ||||||||||||| ||||||| |
|
|
| T |
22603187 |
gattgtttatgcaactgtgagaaagagaaa |
22603158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 437
Target Start/End: Complemental strand, 45622066 - 45621638
Alignment:
| Q |
9 |
atgaagggcataatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaa |
108 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45622066 |
atgaaggatataatagaaacaatggataaatataaattcgctaaagagttgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaa |
45621967 |
T |
|
| Q |
109 |
cattcaggaaatcgctattggtgggttgtttcttcataacaggagagcaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtc |
208 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45621966 |
cattcaggaaaccgctattggtgggttgtttcttcatgacatgagagcaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtc |
45621867 |
T |
|
| Q |
209 |
catttgagttagcaacaggatcataagaaaggatcaagtattccattgcaaaatttaaacatgacataccaaaaagtaatggagaagttagaagcaaaca |
308 |
Q |
| |
|
||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
45621866 |
catttgagttagcaacaagatcataataaatgatcaagtattccattgcaaaatttaaacatgacgtaccaaaaagtgatggagaagttagaagcaaaca |
45621767 |
T |
|
| Q |
309 |
gtgtcattgaggggcctttctctgaagaattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttgnnnnnnnat |
408 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45621766 |
atgtcattgaggggcctttctctgaataattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttgtttttttat |
45621667 |
T |
|
| Q |
409 |
gattgtttctgcaactgtgagagagagaa |
437 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
45621666 |
gattgtttctgcaactgtgagaaagagaa |
45621638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Complemental strand, 20188394 - 20187963
Alignment:
| Q |
9 |
atgaagggcataatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactgaaatcaaaagaaaaatgcatgcaccatggaa |
108 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20188394 |
atgaaggatataatagaaacaatgcataaatataaaatcactaaagaattgtttattgcagtgaaactgaaatcaaaagaaaaatgcatgcaccatggaa |
20188295 |
T |
|
| Q |
109 |
cattcaggaaatcgctattggtgggttgtttcttcataacaggagagcaatattaagtatgtgcttataaattactgtaattagcaatataagagatgtc |
208 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||||| | |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20188294 |
cattcaggaaaccgctattggtggggtgtttcttcatgataggagagcaatattaaatacgtgcttataaattactgtaattagcaatataagagatgtc |
20188195 |
T |
|
| Q |
209 |
catttgagttagcaacaggatcataagaaaggatcaagtattccattgcaaaatttaaacatgacataccaaaaagtaatggagaagttagaagcaaaca |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
20188194 |
catttgagttagcaacaggatcataagaaaggatcaagtattccattgcaaaatttaaacatgacgtaccaaaaagtgatggagaagttagaagcaaaca |
20188095 |
T |
|
| Q |
309 |
gtgtcattgaggggcctttctctgaagaattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttg--nnnnnnn |
406 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
20188094 |
gtgtcattgaggggcccttctctgaacaattgtttaataaattgtgtagaactaaaccatttaattgtgagaaatagaatggaagcaattgtttttttat |
20187995 |
T |
|
| Q |
407 |
atgattgtttctgcaactgtgagagagagaaa |
438 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||| |
|
|
| T |
20187994 |
atgattgtttctgcaactatgagaaagagaaa |
20187963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 51091700 - 51091612
Alignment:
| Q |
18 |
ataatagaatcaatggataaatataaaatcactaaagaattgtttattgcactgaaactga----aatcaaaagaaaaatgcatgcacc |
102 |
Q |
| |
|
||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
51091700 |
ataatagaaacaattgatgaatataaaatcactaaagaattgtttattgcactgaaactgaaattaattaaaagaaaaatgcatgcacc |
51091612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 336 - 438
Target Start/End: Complemental strand, 25613565 - 25613463
Alignment:
| Q |
336 |
aattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagcagttgnnnnnnnatgattgtttctgcaactgtgagagagag |
435 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||| || ||||||||||||| | ||||| |||| |
|
|
| T |
25613565 |
aattgtttaataaattgtgtagaagtaaaccatgaaattgtgagaaatagaatggaagcaattgttttcttataattgtttctgcaattttgagaaagag |
25613466 |
T |
|
| Q |
436 |
aaa |
438 |
Q |
| |
|
||| |
|
|
| T |
25613465 |
aaa |
25613463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 336 - 395
Target Start/End: Complemental strand, 17722357 - 17722298
Alignment:
| Q |
336 |
aattgtttaataaattgtgtagaactaaaccattcaattgtgagaaatagaatggaagca |
395 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
17722357 |
aattgtttaataaattgtatagaagtaaaccatgcaattgtgagaaatagaatggaagca |
17722298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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