View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_high_20 (Length: 373)
Name: NF13425_high_20
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_high_20 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 27977008 - 27977380
Alignment:
| Q |
1 |
ctatgcaatctcaacttaggccgatttttcgacatttaagagagattagaactgaattatcactttggcttgaacataatgcagtgttgcaggatgaact |
100 |
Q |
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| T |
27977008 |
ctatgcaatctcaacttaggccgatttttcgacatttaagagagattagaactgaattatcgctttggcttgaacataatgcagtgttgcaggatgaact |
27977107 |
T |
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| Q |
101 |
acaaggtagatattcatcattatgcaacattcaagatgaaattgcaagagcaggtaataataataatgcagaatctggtggtgctgatgaaaataataaa |
200 |
Q |
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| T |
27977108 |
acaaggtagatattcatcattatgcaacattcaagatgaaattgcaagagcaggtaataataataatgaagaatctggtggtgctgatgaaaataataaa |
27977207 |
T |
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| Q |
201 |
gataaagatgctgagataataagtggttatcaagttgcaaaatttcaacgtgagattcttaacatgaaacaagagaatagtaaagttgcaagtgagttac |
300 |
Q |
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| T |
27977208 |
gataaagatgctgagataataagtggttatcaagttgcaaaatttcaaggtgagattcttaacatgaaacaagagaatagtaaagttgcaagtgagttac |
27977307 |
T |
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| Q |
301 |
aagctggtcttagtcttgtgaaaggaatgaaaaatgaggttgagaagaaacttgatgaacttgatcaagctat |
373 |
Q |
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| T |
27977308 |
aagctggtcttagtcttgtgaaaggaatgaaaaatgatgttgagaagacacttgatgaacttgatcaagctat |
27977380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 28306742 - 28306944
Alignment:
| Q |
1 |
ctatgcaatctcaacttaggccgatttttcgacatttaagagagattagaactgaattatcactttggcttgaacataatgcagtgttgcaggatgaact |
100 |
Q |
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| T |
28306742 |
ctatgcaatcataacttag-ccgattttttgacatttaagagagaatagaattgaattatcactttggttggaacacaatgctttgttgcaagatgaact |
28306840 |
T |
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| Q |
101 |
acaaggtagatattcatcattatgcaacattcaagatgaaattgcaagagcaggtaataataataat---gcagaatctggtggtgctgatgaaaataat |
197 |
Q |
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|||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| | ||||||||| || ||||||||||||| |
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| T |
28306841 |
acaagggagatattcatcattatgcaacattcaagaagaaattgcaagagtaggtaatcataataattaagtggaatctggtaatgttgatgaaaataat |
28306940 |
T |
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| Q |
198 |
aaag |
201 |
Q |
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|||| |
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| T |
28306941 |
aaag |
28306944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 28306967 - 28307038
Alignment:
| Q |
261 |
aacatgaaacaagagaatagtaaagttgcaagtgagttacaagctggtcttagtcttgtgaaaggaatgaaaaat |
335 |
Q |
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| T |
28306967 |
aacatgaaac--gagaatagtaa-gttgcaagtgaattacaaattagtcttattcttgtgaaaggaatgaaaaat |
28307038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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