View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13425_high_28 (Length: 310)
Name: NF13425_high_28
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 21182822 - 21183105
Alignment:
| Q |
18 |
agtctcactatcccaatgcagccttcttaatgagtgctagaccatatgctaccggccagggaacttttgacaacaccaccgttgccggtatcttggaata |
117 |
Q |
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| T |
21182822 |
agtctcactatcccaatgcagccttcttaatgagtgctagaccatatgctaccggccagggaacttttgacaacaccactgttgccggtatcttggaata |
21182921 |
T |
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| Q |
118 |
tgaaatcccatccaatactcatcattcagcttcttcactaaaaaagattccacttttcaaacctactctccctgcacttaatgacacttcttttgcaaca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21182922 |
tgaaatcccatccaatactcatcattcagcttcttcactaaaaaagattccacttttcaaacctactctccctgcacttaatgacacttcttttgcaaca |
21183021 |
T |
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| Q |
218 |
aagttttccaagaaactccgtagccttgctagtgcccagtttcctgctaacgttccacagaaagttgataagcactttttcttc |
301 |
Q |
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| T |
21183022 |
aagttttccaagaaactccgcagccttgccagtccccagtttccggctaacgttccacagaaagttgataaacactttttcttc |
21183105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 21205296 - 21205579
Alignment:
| Q |
18 |
agtctcactatcccaatgcagccttcttaatgagtgctagaccatatgctaccggccagggaacttttgacaacaccaccgttgccggtatcttggaata |
117 |
Q |
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|||| |||||||||||||| || |||||||||| ||||||||| ||||| | |||| ||| ||||||||||||| || || || | |||| | ||||| |
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| T |
21205296 |
agtcacactatcccaatgcggcattcttaatgactgctagaccctatgccgctggccctggaccttttgacaacacaacggtcgctgctatccttgaata |
21205395 |
T |
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| Q |
118 |
tgaaatcccatccaatactcatcattcagcttcttcactaaaaaagattccacttttcaaacctactctccctgcacttaatgacacttcttttgcaaca |
217 |
Q |
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| T |
21205396 |
tgaaatcccaccaaatactcatcattcagcttcttcactaaaaaagcatcctctattcaaacctattcttcctgcatttaatgatacatcctttgcaaca |
21205495 |
T |
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| Q |
218 |
aagttttccaagaaactccgtagccttgctagtgcccagtttcctgctaacgttccacagaaagttgataagcactttttcttc |
301 |
Q |
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||||| ||||| |||||||||||||| || ||||| |||||||| ||||| ||||| ||||| | ||||| |||||||||||| |
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| T |
21205496 |
aagttctccaacaaactccgtagcctagcaagtgcacagtttccagctaatgttcccaagaaaatcgataaacactttttcttc |
21205579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 56 - 301
Target Start/End: Original strand, 21853561 - 21853806
Alignment:
| Q |
56 |
agaccatatgctaccggccagggaacttttgacaacaccaccgttgccggtatcttggaatatgaaatcccatccaatactcatcattcagcttcttcac |
155 |
Q |
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| T |
21853561 |
agaccatatgctacaggccaaggcacttttgacaactcaacagttgctggaatcatagaatatgaaattccatttaatactcaccattcaaattcttcac |
21853660 |
T |
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| Q |
156 |
taaaaaagattccacttttcaaacctactctccctgcacttaatgacacttcttttgcaacaaagttttccaagaaactccgtagccttgctagtgccca |
255 |
Q |
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| T |
21853661 |
tcaaaaaacttccacttttgaaacctattctacctcaacttaatgacacttcatttgcaacaaatttcactaacaaacttcatagcttagcaaatgctca |
21853760 |
T |
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| Q |
256 |
gtttcctgctaacgttccacagaaagttgataagcactttttcttc |
301 |
Q |
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|||||| ||||| ||||| || |||||||||||||||||||||||| |
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| T |
21853761 |
gtttccagctaatgttcctcaaaaagttgataagcactttttcttc |
21853806 |
T |
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