View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13425_high_30 (Length: 300)
Name: NF13425_high_30
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_high_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 5289408 - 5289685
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289408 |
ctcaatttctggtactgggtcagaaccaacaataagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
5289507 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289508 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
5289607 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5289608 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
5289685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 5310808 - 5310531
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310808 |
ctcaatttctggtactgggtcagaaccaacaataagagcagcagctccatctccaaacaatgcttgcccaacaaggctgtccaagtgagtatcactgggg |
5310709 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5310708 |
ccacgaaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
5310609 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5310608 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaaggcccaagagttttgtgagttgataat |
5310531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 5284719 - 5284442
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||| ||||| ||||||||||| || ||| |
|
|
| T |
5284719 |
ctcaatttctggtattgggtcagagccaacaataagagcagcagctccatctccaaatagtgcttgtccaacaagactgtctaagtgagtatcgctaggg |
5284620 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||| |
|
|
| T |
5284619 |
ccacgaaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccac |
5284520 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
5284519 |
ctgcaaaacacccttgttggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataat |
5284442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 5302907 - 5302630
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||| |
|
|
| T |
5302907 |
ctcaatttctggtacggggtcagagccaacaataagagcagcagctccatctccaaatagtgcttgtccaacaagactgtccaagtgagtatcactaggg |
5302808 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
||||| ||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
5302807 |
ccacgaaatgtgacagcggtgacctctgaacatacaaccaacacacgagcacctttgttgttctcagctagatctttggccaaacgaagcaccgtgccac |
5302708 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
5302707 |
ctgcaaaacacccttgttggtacatcatgtaccttttcacatatgggcgaagacccaagagtttggtgagttgataat |
5302630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 285
Target Start/End: Complemental strand, 5315518 - 5315245
Alignment:
| Q |
12 |
atttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccac |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||| |||||||||||||| |||||||||||||| || |||| |
|
|
| T |
5315518 |
atttctggtactgggtcagagccaacaataagagcagccgctccatctccaaatagtgcttgtccaacaaggctgtctaagtgagtatcactaggaccac |
5315419 |
T |
|
| Q |
112 |
ggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgc |
211 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
5315418 |
gaaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttagccaaacggagcaccgtgccacctgc |
5315319 |
T |
|
| Q |
212 |
aaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
||| |||||||||||||||||||| || |||||||||||||| |||||||| || ||||| ||||||||||||| |
|
|
| T |
5315318 |
aaagcacccttgttggtacatcatgtatcttttcacatatgggcgaagacctaatagtttggtgagttgataat |
5315245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 46706699 - 46706976
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
46706699 |
ctcaatttctggtactggatcagaaccaacaataagtgcagcagctctgactccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactaggg |
46706798 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
|| ||||||||||| || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||| ||||||| | |
|
|
| T |
46706799 |
ccgcggaatgtgactgcagtgacttcagaacaaacaaccaatacacgggcacctttgttgttctcagccaaatcgttagccaaacgaagccccgtgcctc |
46706898 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
46706899 |
ctgcaaagcaaccttgttggtacatcatataccttttcacatatgggcgaagaccgaagagttttgtgagttggtaat |
46706976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 44141612 - 44141335
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
44141612 |
ctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagtgcttgtccaacaaggctgtccaagtgagtatcactaggg |
44141513 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
|| || |||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| | |
|
|
| T |
44141512 |
ccgcgaaatgtgactgcagtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctc |
44141413 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
44141412 |
ctgcaaagcaaccttgttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaat |
44141335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 44128985 - 44128708
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| || |||||||||||||||||||| || || || ||||||||||||||||||||||||||||| ||| |
|
|
| T |
44128985 |
ctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagggcctgtccaacaaggctgtccaagtgagtatcactaggg |
44128886 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
|| || |||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| | |
|
|
| T |
44128885 |
ccgcgaaatgtgactgcagtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctc |
44128786 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
44128785 |
ctgcaaagcaaccttgttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaat |
44128708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 44133190 - 44132913
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
|||||||||||||||||| || ||||||||||| || |||||||||||||||||||| || || || ||||||||||||||||||||||||||||| ||| |
|
|
| T |
44133190 |
ctcaatttctggtactggatctgaaccaacaattagtgcagcagctccatctccaaatagggcctgtccaacaaggctgtccaagtgagtatcactaggg |
44133091 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
|| || |||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||||| | |
|
|
| T |
44133090 |
ccgcgaaatgtgactgcagtgacttcagaacagacaaccaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctc |
44132991 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
44132990 |
ctgcaaagcaaccttgttggtacatcatataccttttcacatatgggcgaagacctaagagttttgtgagttggtaat |
44132913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 1478410 - 1478133
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || |||||||| ||||||||||| |||||||| |||||||| |||||||| ||||||||||| || |
|
|
| T |
1478410 |
ctcaatttctggtattgggtcagaaccaacaatgagtgcagcagcaccatctccaaatagtgcttgtccaacaagactgtccaaatgagtatcactagga |
1478311 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
||||||||||| || || || ||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
1478310 |
ccacggaatgtcactgcagtaacttcagaacaaacaaccaacacacgagcacctttattgttctcagccaagtccttggccaaacgaagcaccgtcccac |
1478211 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
1478210 |
ctgcaaaacatccttgttggtacatcatatacctcttcacatatggacgaagacctaagagtttggtgagttggtaat |
1478133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 1482604 - 1482327
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||| || |
|
|
| T |
1482604 |
ctcaatttctggtattgggtcagaaccaacaatgagtgcagcagctccatctccaaagagtgcttgtccaacaagactgtccaaatgagtatcactagga |
1482505 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
||||||||||| || || || ||||||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
1482504 |
ccacggaatgtcactgcagtaacttcagaacaaacaaccaacacacgagcacctttattattctcagccaagtccttggccaaacgaagcaccgtcccac |
1482405 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
||||||| || ||||||||||||||||| || || |||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
1482404 |
ctgcaaagcatccttgttggtacatcatgtatctcttcacatatggacgaagacctaagagttttgtgagttggtaat |
1482327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 285
Target Start/End: Complemental strand, 1492578 - 1492302
Alignment:
| Q |
9 |
tcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggc |
108 |
Q |
| |
|
|||||||||||||| || ||||| |||||||| || ||||| |||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||| | |
|
|
| T |
1492578 |
tcaatttctggtaccggatcagacccaacaataagtgcagctgctccatctccaaatagtgcttgtccaacaagactgtccaagtgtgtatcactgggac |
1492479 |
T |
|
| Q |
109 |
cacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacc |
208 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
1492478 |
cacgaaatgtgactgcagtgacttcagaacaaacaactaacacacgagcacctttgttgttctcagccaaatccttagccaaacgaagtaccgtgccacc |
1492379 |
T |
|
| Q |
209 |
tgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
||||||||| ||||| ||||||||||| || ||||| ||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
1492378 |
tgcaaaacaaccttgctggtacatcatgtatctttttacatatggacgaagacctaagagtttagtgagttgataat |
1492302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 1505388 - 1505111
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
|||||||||||||| ||| || ||||||||||| || |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
1505388 |
ctcaatttctggtattggatctgaaccaacaattagtgcagcagctccatctccaaatagagcttgtccaacaaggctgtccaagtgagtatcactaggg |
1505289 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
|| || |||||||| || |||||||| ||||| |||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||| |||| |
|
|
| T |
1505288 |
ccgcgaaatgtgactgcagtgacttcggaacagacaaccaacacacgggcacctttgttgttctcagccaagtccttggccaaacgaagcaccgtcccac |
1505189 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||| ||||||||||| |||||||| |||||||| |||||||| |||| |
|
|
| T |
1505188 |
ctgcaaaacatccttgctggtacatcatgtacctcttcacatatgggcgaagacctaagagtttggtgagttggtaat |
1505111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 8 - 287
Target Start/End: Complemental strand, 1509535 - 1509256
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| || |||||||||||||||||||| | |||||| |||||||| |||||||| |||||||||| ||| |
|
|
| T |
1509535 |
ctcaatttctggtacagggtcagtaccaacaatgagtgcagcagctccatctccaaataatgcttgtccaacaagactgtccaaatgagtatcaccaggg |
1509436 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
|||| |||||||| || |||||| ||||||||||||||||||||||||| ||| ||| || ||||||||||| || |||||| ||||||| ||||||| |
|
|
| T |
1509435 |
ccacaaaatgtgactgcaatgactttagaacaaacaaccaacacacgagcatcttggttattttcagccaaatcctttgccaaatgaagcacagtgccac |
1509336 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataatga |
287 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| |||||||| ||||||| || ||||| || |||||||||||| |
|
|
| T |
1509335 |
ctgcaaaacacctttgttggtacatcatgtacctttttacatatgggtgaagacctaaaagtttggtaagttgataatga |
1509256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 1499651 - 1499374
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
||||||||| |||||| ||||||| |||||||| | || ||||||||||||||||| | |||||| |||||||| ||| | |||||||| ||| || |
|
|
| T |
1499651 |
ctcaatttcaggtactaggtcagagccaacaatgactgccgcagctccatctccaaatattgcttgtccaacaagtttgtgtaggtgagtattactaggt |
1499552 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
|||| |||| || || |||| |||||||||||||||||||||||||||||||||||| |||||||| || || || ||||||||||| || || |||| |
|
|
| T |
1499551 |
ccacaaaatgagattgcagtgatttcagaacaaacaaccaacacacgagcacctttgttattctcagctaagtccttcgccaaacgaagtactgttccac |
1499452 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
||||| |||||||| ||||||||||||| ||||||||||||||||| |||||| ||||||||||| ||||| |||| |
|
|
| T |
1499451 |
ctgcataacaccctagttggtacatcatgtaccttttcacatatgggttaagacctaagagttttgttagttggtaat |
1499374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 126 - 285
Target Start/End: Complemental strand, 1486963 - 1486804
Alignment:
| Q |
126 |
gtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgtt |
225 |
Q |
| |
|
|||||||||||||| | ||||||||| ||||| |||| |||||||||||||| || |||||| |||| || || ||||| |||||||| || ||||||| |
|
|
| T |
1486963 |
gtgacttcagaacatattaccaacacaagagcatctttattgttctcagccaagtccttggcctaacgtagaacagtgccccctgcaaagcatccttgtt |
1486864 |
T |
|
| Q |
226 |
ggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
|||| |||||||||| |||||||| || | |||||| ||||||||||||||||| |||| |
|
|
| T |
1486863 |
ggtatatcatataccgtttcacatccgggcaaagacctaagagttttgtgagttggtaat |
1486804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 8 - 285
Target Start/End: Original strand, 24163501 - 24163778
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
||||||||| ||| ||||||||| |||||||| | |||||||||||||||||||| || ||||| ||||||||| |||| ||||||||||| || || |
|
|
| T |
24163501 |
ctcaatttcctgtattgggtcagagccaacaatgactgcagcagctccatctccaaatagagcttgtccaacaaggttgtctaagtgagtatcgcttggt |
24163600 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
|||| ||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| ||||| |||||||||| |
|
|
| T |
24163601 |
ccacaaaatgtgattgcggtaacttcagaacaaacaaccaacacacgagaacctttgttgttctcagccaagtccttggccaagcgaagtaccgtgccac |
24163700 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||| |||| |
|
|
| T |
24163701 |
ctgcaaaacacccttgttggtacatcatatacctttttacacatgggcgaagacctaagagttttgtgagttggtaat |
24163778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 8 - 283
Target Start/End: Original strand, 37859075 - 37859350
Alignment:
| Q |
8 |
ctcaatttctggtactgggtcagaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactgggg |
107 |
Q |
| |
|
||||| || ||||| |||||| ||||| || |||| ||| || || ||||||||||||| ||||||||| |||||||| || | ||||| |||||||| |
|
|
| T |
37859075 |
ctcaacttgtggtaatgggtctgaacctacgatcacagctgctgcaccatctccaaacaatgcttgccccacaaggctatcaagatgagtgtcactgggt |
37859174 |
T |
|
| Q |
108 |
ccacggaatgtgacagcggtgacttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccac |
207 |
Q |
| |
|
|||||||| || || || || | || |||||||| |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
37859175 |
ccacggaaagtaactgcagttatctctgaacaaactaccaacacacgagcacctttgttgttttcagccaagtctttagccaaacgaagcaccgtgccac |
37859274 |
T |
|
| Q |
208 |
ctgcaaaacacccttgttggtacatcatataccttttcacatatggacgaagacccaagagttttgtgagttgata |
283 |
Q |
| |
|
| |||||||| ||||||||||||||||| || | ||||||||||||||||| |||||||| ||||| || ||||| |
|
|
| T |
37859275 |
cagcaaaacaaccttgttggtacatcatgtaacgcttcacatatggacgaaggcccaagagctttgtcagctgata |
37859350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 30 - 283
Target Start/End: Original strand, 37863123 - 37863376
Alignment:
| Q |
30 |
gaaccaacaatcagagcagcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtga |
129 |
Q |
| |
|
||||||||||||| ||| || || ||||||||||||| ||| ||||| ||||| || || | ||||||||||| || |||||||| || || || |||| |
|
|
| T |
37863123 |
gaaccaacaatcacagctgctgcaccatctccaaacaatgcctgccccacaagactatcaagatgagtatcactaggtccacggaaagtaactgcagtga |
37863222 |
T |
|
| Q |
130 |
cttcagaacaaacaaccaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttggta |
229 |
Q |
| |
|
|| |||||||| ||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| || |
|
|
| T |
37863223 |
tctccgaacaaaccaccaaaacacgagcgcctttgttgttttcagccaaatctttagccaaacgaagcaccgtcccaccagcaaaacaaccttgttgata |
37863322 |
T |
|
| Q |
230 |
catcatataccttttcacatatggacgaagacccaagagttttgtgagttgata |
283 |
Q |
| |
|
||||||||| | |||||||| || |||||||||||||| |||||||| ||||| |
|
|
| T |
37863323 |
catcatataacgcttcacatacgggcgaagacccaagagctttgtgagctgata |
37863376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 146 - 283
Target Start/End: Complemental strand, 39030344 - 39030207
Alignment:
| Q |
146 |
caacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttggtacatcatataccttttc |
245 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||| ||||| || | |||| |||||||| |||||||||||||||||||| | || |
|
|
| T |
39030344 |
caacacacgggcacctttgttgttctcagccaaatctttagccaagcgaagagccatcgcaccagcaaaacaaccttgttggtacatcatataacgcttt |
39030245 |
T |
|
| Q |
246 |
acatatggacgaagacccaagagttttgtgagttgata |
283 |
Q |
| |
|
|||||||||| ||| || ||||| |||||||| ||||| |
|
|
| T |
39030244 |
acatatggacaaaggcctaagagctttgtgagctgata |
39030207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 48 - 285
Target Start/End: Complemental strand, 35251182 - 35250945
Alignment:
| Q |
48 |
gcagctccatctccaaacagtgcttgcccaacaaggctgtccaagtgagtatcactggggccacggaatgtgacagcggtgacttcagaacaaacaacca |
147 |
Q |
| |
|
||||| ||||||||||||| |||||| || || || || || | || || ||||| |||||||| || || || || |||| || |||||||| || | |
|
|
| T |
35251182 |
gcagcgccatctccaaacaatgcttgtcccacgagactatcaagatgggtgtcactagggccacgaaaagtcactgcagtgatctctgaacaaaccacaa |
35251083 |
T |
|
| Q |
148 |
acacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttggtacatcatataccttttcac |
247 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| ||||||||||| ||| | ||||| || |||||||||||||||||||||||||| | |||||| |
|
|
| T |
35251082 |
gaacacgagcacctttattgttctcagccaaatctttagccaaacgaagaaccataccaccagcgaaacacccttgttggtacatcatataacgtttcac |
35250983 |
T |
|
| Q |
248 |
atatggacgaagacccaagagttttgtgagttgataat |
285 |
Q |
| |
|
| |||||||| || | | ||||||||| ||||||| |
|
|
| T |
35250982 |
cgacggacgaagtcctagcaattttgtgagctgataat |
35250945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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