View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13425_high_31 (Length: 298)
Name: NF13425_high_31
Description: NF13425
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13425_high_31 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 28980161 - 28979893
Alignment:
| Q |
18 |
ctctccagctccaataatccttattgcaacctcccctgcactactcccagcaacagcaccaccagcatcaacctgaggtcgtaactccgaaccagaaact |
117 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28980161 |
ctctccagctccaataattcttattgcaacctcccctgcactactcccagcaacagcaccaccagcatcaacctgaggtcgtaactccgaaccagaaact |
28980062 |
T |
|
| Q |
118 |
ccaccattgttgacaatcataccctcagaatcattacccgaacgcaaaattccagaataatccaacaaaaacgaaatcggtgacaaaaaggggttaacag |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28980061 |
cca---ttgttgacaatcataccctcagaatcattacccgaacgcaaaattccagaataatccaacaaaaacgaaatcggtgacaaaaaggggttaacag |
28979965 |
T |
|
| Q |
218 |
gtaacctcattccataccaagatacactaccattgttatcatcagtattaatccctccaaaagatgatgatg |
289 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28979964 |
gtaacctcattccataccaagatacactaccattgttatcatcagtattaatccctccaaaagatgatgatg |
28979893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University